BAC Information

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BAC

Clone NameMSMg01-133D12
ChromosomeY (Build37)
Map Location 1,635,001 - 1,635,144
singlet/doubletsinglet
Overlap geneLOC100039381
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373
Downstream geneLOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133D12.T7 (MSMg01no133_d12.b1)MSMg01-133D12.TJ (MSMg01no133_d12.g1)
ACCAG340256AG340257
length702773
length of high quality
(start - end)
230 (121 - 350)205 (73 - 277)
definitionCHROMAT_FILE: MSMg01no133_d12.b1 PHD_FILE: MSMg01no133_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:59 2005CHROMAT_FILE: MSMg01no133_d12.g1 PHD_FILE: MSMg01no133_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCGCGGAA
TTCTTTGTTCACTTCTGAGCCCAACTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTTTTGCGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CGCCTCNTTCCACCCCCCCCCCCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTAAAACAAGGAGATAAGTATGGATCAATTCGCATT
CTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCAACACCAGAACCATGCAGTTTTTATCATATCTGCCTC
TGTATCAAAGATTCAAGTCAGGCTTGATGATTTCCCCAGAGGTTCTTTTA
TC
ATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCGAAATTACAGTCTTAAATTTATGTGTGACCTCATTCT
CAGAAAACAATGAAGGTGTATTCAATGCATATATGCTGACCTCTTTTCTA
TGCCAGTTCTCATGGGTTTCAAATTCTATGAGGTTGCCCACTATGTTGGT
CACTTCTCTGAGTAGCCCCTGTGCTTCAAGGGGGTCTTACTGGGTCCCAC
ACTCTGAGTGTTTTTTTGTTTGTTTGGTTGCCTGGTTGGTTTTGTTGTTG
TCGTAGGTTTTGTTGTTCTTTTTTTCTTTTCCCCTTCTCTCCTTTTTTCT
TCTTCTCTCATTTCTTTCCTTCTCCCCTTTCACCCACCCCTTTTCTCCTT
TTCCCCTCTCTCTCCCACACATACATTCTTTCCCCCCTTCCTTCCCCATT
TCCCCCTTACTCCTTCTCCTCATGTCTTACTTCCTCTCCCCCCCTTTTTT
TTTTTTCCTCCCCCCCCCTTTTTATTCTCCCCACTCTTTTAACCCCCTTT
CTACCCCTTTACCCCCCCCCCTTTCCCTCCTTCCATTATCTCACCTTTTT
TTTTTTTTAACCTTTCTATCATCTTCTTCATTTCCTCTATCCTCCTCTTC
ATTTATCTCCCCCTCACCTCCCCTTATTATTTATTTTTACTCCCCTACGC
CTTTTTTCCTCCTTACTGCATCCCTTTACTTCATCATATCTCCCCTCATC
CCCTCCTCCTTCTTCCCCATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_d12.g1 MSMg01no133_d12.g1 CHROMAT_FILE:
MSMg01no133_d12.g1 PHD_FILE: MSMg01no133_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:59 2005
         (205 letters)



>mm_chrY_1634792_1635397
          Length = 606

 Score =  180 bits (93), Expect = 5e-50
 Identities = 132/145 (91%), Gaps = 3/145 (2%)
 Strand = Plus / Minus

                                                                       
Query: 10  ttatgtgtgacctcattctcagaaaacaatgaaggtgtattcaatgcatatatgctgacc 69
           |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 353 ttatgtgtgacctcattctcagaaaacactgaaggtgtatccaatgcatatgtgctgacc 294

                                                                       
Query: 70  tcttttctatgccagttctcatgggtttcaaattctatgaggttgcccactatgt-tggt 128
           ||||| ||||||||||| ||||||||||||||| |||||| |||| ||||||||| || |
Sbjct: 293 tctttcctatgccagttgtcatgggtttcaaatgctatgacgttgaccactatgtatg-t 235

                                    
Query: 129 cacttctc-tgagtagcccctgtgc 152
            ||||||| |||| |||||||||||
Sbjct: 234 gacttctcctgagaagcccctgtgc 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 606
Length adjustment: 8
Effective length of query: 197
Effective length of database: 598
Effective search space:   117806
Effective search space used:   117806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)