Query= MSMg01no134_j14.b1 MSMg01no134_j14.b1 CHROMAT_FILE:
MSMg01no134_j14.b1 PHD_FILE: MSMg01no134_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:09 2005
(417 letters)
>mm_chrY_1655550_1656361
Length = 812
Score = 335 bits (173), Expect = 4e-96
Identities = 347/407 (85%), Gaps = 19/407 (4%)
Strand = Plus / Plus
Query: 18 accacaggaaat-ccacactcccccttcccatgagacaatgtatccatacctatacagag 76
|||||||| || |||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct: 218 accacagg-gatgccacactccctcttcccatgggacaatgtattcatacctatacagag 276
Query: 77 aattcaaaacaaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg- 135
||||||||||||||||||| ||||||| ||||||| |||| || ||||||||||||||
Sbjct: 277 aattcaaaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgt 336
Query: 136 cttgggtgctttctgtttcaggctcacaatgatcaatggtatatacttt-ctaggttgta 194
|| | |||| || | ||||||||||| ||| |||||| |||| ||| ||| |||||
Sbjct: 337 ctcag-tgctctcagcttcaggctcac---gattaatggtttata-tttgctaccttgta 391
Query: 195 taactgcacttca-tttctctaccaggaacctttcctcagattctgtcctcatcaagaat 253
|||||||||| || ||| |||||| |||| ||| |||||||| ||||||||| |||| ||
Sbjct: 392 taactgcactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat 450
Query: 254 cccat-ctaataccatcagacacttctatgcat-cagagggaacaaggtcttgctgtgtg 311
| || | || ||||||||| | |||||||| | |||||||||||| |||| ||||||||
Sbjct: 451 c--atgc-aacaccatcagaaaattctatgc-tacagagggaacaaagtctagctgtgtg 506
Query: 312 ccttgcaggttgggtagagcactgtcaatatcccttctcctccagcaaaccctctcaag- 370
|| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccatgcagtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaat 566
Query: 371 gctcacaacggttgtcttccaggataaaatctgattgcctaagagaa 417
|||||||| | |||||||||| || ||| ||||| ||||||| ||||
Sbjct: 567 gctcacaaagtttgtcttccaagacaaa-tctgagtgcctaaaagaa 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 812
Length adjustment: 9
Effective length of query: 408
Effective length of database: 803
Effective search space: 327624
Effective search space used: 327624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_j14.g1 MSMg01no134_j14.g1 CHROMAT_FILE:
MSMg01no134_j14.g1 PHD_FILE: MSMg01no134_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:09 2005
(762 letters)
>mm_chrX_143698585_143699747
Length = 1163
Score = 195 bits (101), Expect = 9e-54
Identities = 396/503 (78%), Gaps = 47/503 (9%)
Strand = Plus / Plus
Query: 277 aaaaaaaaacattgttatcttcccaagtgactgtgaaacctt-tgtcttctgtac--cat 333
|||||||||||||||||||||||||| || ||||||||||| | | | || || |||
Sbjct: 479 aaaaaaaaacattgttatcttcccaaaagagtgtgaaaccttcag-catatgcaccacat 537
Query: 334 gtgctcag-aaatttccactaattacatcaggtactccaaca-actgtga-gatgtaaac 390
|| |||| |||||||| | || ||||||||| |||| |||| | ||||| | ||||| |
Sbjct: 538 gt--tcagaaaatttcc-caaactacatcagggactctaacata-tgtgatg-tgtaagc 592
Query: 391 aagcagt-tccagaatattctatacctgtccaggaaact-ttggatattttgctgatgat 448
||| || || |||| ||||| | |||| ||||| ||| | |||| |||| | ||
Sbjct: 593 aag-ggtctctagaacattctgtgcctgaccaggggactgtaggatcttttcc-----at 646
Query: 449 -t-ccc-ggggtttctagaacattcagaatctttccaacagaagcgagggaact-agtca 504
| ||| ||||||| |||| |||||| |||||||||| |||||| ||| ||| | |||
Sbjct: 647 ctaccctggggtttatagaggattcagcatctttccaaaagaagctcgggcactca-tca 705
Query: 505 a-catggtagaatct-caggat-acctcaccaatat-tccaaagtactacagtccctttg 560
| ||||| ||||| | |||||| ||| || || ||||| | || |||| || ||||
Sbjct: 706 agcatggcagaat-tgcaggatgccct-gcc---atctccaaggaaccacaggccttttg 760
Query: 561 ccacatccctcaagtcatacaggatattcacaacctgaccaatgatctcaggagaattct 620
||| ||||||| | ||||||||| ||||||||||||| ||| |||||| ||||| ||||
Sbjct: 761 acac-tccctcagggcatacaggacattcacaacctgatcaaagatctcgggagacttct 819
Query: 621 ttagaagtcccaagggatctagcacctttg--aagtctaccaaa-ttttcatatctgttg 677
|| | |||| ||||||||||| ||| |||| | ||||||||| ||||| ||||||||
Sbjct: 820 ttggtagtctcaagggatctatcacatttgcta--tctaccaaacttttcgtatctgttc 877
Query: 678 aggcatgtctaggcct---ttcactatatgctcaacagtctatccagcagtcatcatctt 734
||||| ||| || || |||| || | ||||||||||||||||||||||||||||||
Sbjct: 878 aggcaactctgggtctgtcttca-taca--ctcaacagtctatccagcagtcatcatctt 934
Query: 735 ccc-aaaagattctgggaacatc 756
|| |||||||||||||||||||
Sbjct: 935 cctgaaaagattctgggaacatc 957
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1163
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1153
Effective search space: 867056
Effective search space used: 867056
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
