BAC Information

Click to search

BAC

Clone NameMSMg01-136K01
ChromosomeY (Build37)
Map Location 2,483,595 - 2,483,898
singlet/doubletsinglet
Overlap geneLOC667217
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356
Downstream geneLOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136K01.T7 (MSMg01no136_k01.b1)MSMg01-136K01.TJ (MSMg01no136_k01.g1)
ACCAG342777AG342778
length702696
length of high quality
(start - end)		476 (80 - 555)601 (86 - 686)
definitionCHROMAT_FILE: MSMg01no136_k01.b1 PHD_FILE: MSMg01no136_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:04 2005CHROMAT_FILE: MSMg01no136_k01.g1 PHD_FILE: MSMg01no136_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCCGCTCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAGTGTGGAGACCCCTCAGAACATTGGAAATAGGT
CTACCTGAAGACCGACATGTACCACTCTTGGGCATATACCAAAAAGATGT
CCCACCATGCCCCAAGGCACATGTTTTTCTATGTTCATAACAGCCTTGTT
TATTATAGCTAGAAGCTGCAAATAACCCAGATGTCCCAAAACAGAAGAAT
GGATACAGAAAATGTGGCTCATTTACACAATGAAATACTACTCAGCTATT
AAGAAACGAAGACATCCTGAGTTTTTCAGGCAAATGGATGTAACTCGGAA
ATATCATTCTGAGTAAGGCAACTCAGAACCAAAAGGACATGCATGGTATA
TCCTCATTAATAAGTGGATATTAACCAAACCACCGCAGAACACCCTGTAT
TCATTCCGCAGAACTTAAAAAAGTTATCAAGCCACAAGTCCCAAGTGAGG
ACACCTCAATCCCACTTGGAAGGGAGAAAAAGAAATCACAGAGCGAGTGG
GGGTGGGTGGGAGGCTCTCATCTGTTCATTGCCCTTATATCCCCCCCTCA
TATCTTTTCCTTTCTCTTTCCCTTCCCCTCGTTTTTTCTCCCTTCTCTTT
CCCTCCCCTCTCAAAATAATTTCCCCCCCACTAAACTTATTTCCCACCTT
CC

TTCTAAAATTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAGCAATTTAG
TAGATTTGATTAATGTCTCCTTACATCACATAGATATTTTCTACAGTGCA
TATAAGCACATATATTTTAGAATATACTGAAACTTAAAAATGTAAATTAA
AAAAAAAACAAAAACCTCTACCAACTTCAAATTAAAAAAACACACTTATT
TTAGAATTCTCTAGGATACTCGCAATTTCCTGTATTCCCTACTCATGATG
TCCATATGTTAGCATCTTACAAATTTGTATGACAATAATGAGGAGAAAAT
AAAATTTGTAAGGAAAAAAAAAGACAGTTTTGTCTTAGACTACTTATTAA
CAAATGCCTGGGCCACAAACTGTGGCTTATTCCCAGAATAACGTATTTAA
CACATTCAAAATATTTTATGTTTTGTACATTTTTAGTTACCCCTTTATCT
ATTTACTTAGCATCTTCCTAAATATCTCCCTTAGCATATGTGCCAGCATC
TGTCCCTGAATCTGTTTATTCTCCTAATATTTCATAGAATACTCTCTTTT
TGAAAAGTCTCACCTCATATTTTCTTCCTCAGCTCATTTGTCATACACAT
TATTTAATTGACAGATGATGTTTATAAGAGAGTCTCAAAATGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_k01.g1 MSMg01no136_k01.g1 CHROMAT_FILE:
MSMg01no136_k01.g1 PHD_FILE: MSMg01no136_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:04 2005
         (601 letters)



>mm_chrY_2483094_2484098
          Length = 1005

 Score =  217 bits (112), Expect = 2e-60
 Identities = 258/312 (82%), Gaps = 20/312 (6%)
 Strand = Plus / Minus

                                                                       
Query: 302 agactacttattaacaaatgcctgggccacaaactgtggcttattcccagaataacgt-a 360
           |||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||| | |
Sbjct: 805 agactacttattgacaaatgcctaggccacaaactgtggctcattcccagactaac-tca 747

                                                                       
Query: 361 tttaacacattcaaaatatt-t-tatgttttgtacatttttagttaccccttt-atc--- 414
           |||||| |||||||| |||| | ||||  |  | |||  ||||||||  |||| |||   
Sbjct: 746 tttaacccattcaaactattctatatg--tcctccatggttagttacatctttcatcccc 689

                                                                       
Query: 415 -tatttacttagcatcttcctaaatatctcccttagcatatgtgccagcatctgtccctg 473
            |||    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 688 ttat----ttagcatcttcctcaatatctcctttagcatatgtgccagcatctgtccctg 633

                                                                       
Query: 474 aatct--gtttattctcctaatatttcat-agaatactctctttttg-aaaagtctcacc 529
           |||||   |||||||||||| |||||| | |||||||||||||  ||  |  || |||| 
Sbjct: 632 aatctccttttattctcctactatttc-tcagaatactctcttcctgccagtgtatcaca 574

                                                                       
Query: 530 tcatattttcttcctcagctcatttgtcatacacattatttaattgacagatgatgttta 589
           || |||||| ||||||| |||||| |||||| || |||||| |||||||| ||||| |||
Sbjct: 573 tcgtatttttttcctcacctcattggtcatagactttattttattgacaggtgatgctta 514

                       
Query: 590 taagagagtctc 601
           ||||||| ||||
Sbjct: 513 taagagattctc 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1005
Length adjustment: 10
Effective length of query: 591
Effective length of database: 995
Effective search space:   588045
Effective search space used:   588045
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |