BAC Information

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BAC

Clone NameMSMg01-140A05
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140A05.T7 (MSMg01no140_a05.b1)MSMg01-140A05.TJ (MSMg01no140_a05.g1)
ACCAG345270AG345271
length711710
length of high quality
(start - end)		589 (51 - 639)619 (92 - 710)
definitionCHROMAT_FILE: MSMg01no140_a05.b1 PHD_FILE: MSMg01no140_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:36 2005CHROMAT_FILE: MSMg01no140_a05.g1 PHD_FILE: MSMg01no140_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGNGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAA
TCCGCGGAATTCATCTCTATCTCGTTTTGATTCCCATATCCTGAGATTAA
AGTCCTTTCTAAGCAGATCTCAACACCTTTTTTTAAAATTTTCTGTCTCA
CAGTTCTTGAAGAATAGATGGGGGAGCAGAGAAAATTTCACCCCCAAAAA
TTGGCAATTAGTGGCTGCAGGTGTGAGGGCCAGTTTTCTTCATAGATTTG
GCTCCTCAGAGGCTGCCCATGTTCCAGTGGATGTGTTTCCCTAACCCCAC
ATATGTAGTCAGCACTAAATTCACTCAGTGGTCTTTATTAAAATGTGCAT
GGAATTAAGGCTAAAAGTGATACAGGAGAAATGGAGAGCAATTCAAGGAG
GAGAAGATGGTGATGGATTTACTCAAACTCATTATGTTTATGTACAAAGT
TCTTCAGCAAAACCTTTAAAACTAAGTAAGTAAGTAAATAAGTAAATAAG
TAAGCAATAAGCAAGCAAGCAAGTAAGTAAAAAATAAATATATGTGTAAA
TAGACAAATATATTTTTATGCAATCTCACGTGCAATAGGCATGAAAGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNNNTNNN
NNNNTNNTNTTTTTTNTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTN
NTTTTTTTTTT

NNNNNCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAAAAACCAGTGGTGTG
GGTAGCAGCAAAGTTCTTGAGTCTCAAAGACAACAGATACCGTGGCTGAA
TATTCCAACTACAACAACTAGGTAACATTGGTTCTACACTTAGCATGCCG
TTTCTAGAAAAAAAAATTAAAGAATTAAGCCATGTTTCCTCTGAACCTGA
CATGTTACTATCACAAATGAAAGAAGGATCCATGATCACATGAATATGAA
AGGCGCATGAAGCAGCAAAATTGTTCAACTTATTGGCAGCTAGTCAGCAT
TAACACAAGAAGGGACAAAGACAATAAACAGCTTTGAAGACATGTCCAAA
TGACCACGTTCATTTACAAGTTTTTTACCCATTCCATGCACATCCATTGA
TTGATTAACTCATTGATTAAAGCCCTCAGGTTCCAATCACTTTTCAGAGA
GCATATTGTACTACCTATGAACATTGTACTGTGGACCAAAGCCTTCATCA
AAGACCCATGACTGACATTTCAAAACAATTTAACCACAGAATTCTTTATT
TGAAACAAAGTGATAGGATCCATCTATCTCTTCAAGGATATCTCCGTTTT
GTTCAAAAAGAACAAAAATGCAATGCAAGTTCAGGATATTGATCACCTAT
CCATGCATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_a05.b1 MSMg01no140_a05.b1 CHROMAT_FILE:
MSMg01no140_a05.b1 PHD_FILE: MSMg01no140_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:36 2005
         (589 letters)



>mm_chrY_2603453_2604442
          Length = 990

 Score =  137 bits (71), Expect = 2e-36
 Identities = 95/105 (90%), Gaps = 5/105 (4%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatctctatctcgttttgattcccatatcctgagattaaagtcctttctaagcag 66
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 250

                                                        
Query: 67  atctcaacaccttttt---ttaaaattttctgtctcacagttctt 108
           | |||||||  |||||   || ||||||||||||||||| |||||
Sbjct: 249 acctcaaca--tttttgtttttaaattttctgtctcacaattctt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space:   567420
Effective search space used:   567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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