Query= MSMg01no142_j05.b1 MSMg01no142_j05.b1 CHROMAT_FILE:
MSMg01no142_j05.b1 PHD_FILE: MSMg01no142_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:25 2005
(608 letters)
>mm_chrY_2487718_2488719
Length = 1002
Score = 433 bits (224), Expect = e-125
Identities = 495/598 (82%), Gaps = 41/598 (6%)
Strand = Plus / Minus
Query: 9 tttaacattttttaaattt--tgttaattcaacaacaagcgtcagatgctccagtccatt 66
|||||||| ||||||| || || |||| ||||||| | ||||||| || |||||||||
Sbjct: 902 tttaacatcttttaaacttcctg--aattaaacaacaggggtcagatccttcagtccatt 845
Query: 67 agttggtt--gcaaatatctgcagctgaatccttcacctgctagt----tcctaatgagg 120
||||||| | |||||||||| ||||||| |||| || ||||| |||| | |||
Sbjct: 844 ggttggtttgg--aatatctgcatctgaatctttcagctcctagttgggtcct--t-agg 790
Query: 121 taca-tgtcttaaacttgttgtagtgtatgtactaggtaatgaatcaaaataatatc--- 176
| | || ||||||||||||| |||| || || ||| |||||||| ||| ||||||
Sbjct: 789 aatattg-cttaaacttgttgcagtggatataatagctaatgaatgaaa--aatatctct 733
Query: 177 aaaaa--tatattgcatattgtaactgagaaatataacgttggttctaagggacctattc 234
||||| |||||| ||||| |||||||||||||||| ||| |||||| | |||||||
Sbjct: 732 aaaaatgtatattatatattttaactgagaaatataatattgattctaatgcacctattt 673
Query: 235 acattcagttcaagatataggtaataaacagtgtttcttaatgtttcttaaaatgactgt 294
||||||||| |||||||||| | |||||| ||||| ||||||||| ||||| | |
Sbjct: 672 gcattcagttgaagatataggcattaaacactgttt----gtgtttcttataatgatttt 617
Query: 295 gggtaacct-aaagaaacaaagctaaaccaaactaaaccaaaagaaacaccctcttctat 353
|||||| || ||| ||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 616 gggtaa-ctaaaataaacaaagctaaacc-----aaaccaaaagagacaacctcttctat 563
Query: 354 acattgtctcatcttcttccaatt-gaccag-ttcttaaaagccatgctcttgagtgaaa 411
||||||||||||||||| | ||| | |||| ||| |||| |||||||||||||||| ||
Sbjct: 562 acattgtctcatcttctactgattcg-ccagtttc-taaaggccatgctcttgagtgtaa 505
Query: 412 ctacatattggaagtgcccttcccctactctgattcagaatatcactttacatgagctca 471
||||| ||||||||| |||| || ||||||||||||||||| || |||||||||||||
Sbjct: 504 ctacacattggaagtatcctttccgtactctgattcagaatagcagtttacatgagctcg 445
Query: 472 gatatcttattttgtaatctgagtgaatgtgtgactttgatattagttgattgttaatag 531
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 444 gataccttattttgtaatctgagtgaatgtgtgactttgatattagttgattggtaagag 385
Query: 532 aaagc-acaaattgtgtaggaatgtgaatgaatgttacagatgccattccaatatcat 588
|||| | ||| |||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct: 384 aaagtga-aaactgtgtaggaaagtgaatgaatgttgcagatggcattccaatatcat 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1002
Length adjustment: 10
Effective length of query: 598
Effective length of database: 992
Effective search space: 593216
Effective search space used: 593216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_j05.g1 MSMg01no142_j05.g1 CHROMAT_FILE:
MSMg01no142_j05.g1 PHD_FILE: MSMg01no142_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:26 2005
(653 letters)
>mm_chrY_1266014_1267069
Length = 1056
Score = 567 bits (293), Expect = e-165
Identities = 548/647 (84%), Gaps = 42/647 (6%)
Strand = Plus / Plus
Query: 15 tactgaacatatacagaccacttatatt-tcaatctcctaaatagcaactc--attttat 71
|||||||||||||||||||||||||||| || |||||||||||| |||||| | |||
Sbjct: 206 tactgaacatatacagaccacttatattgtc-atctcctaaataacaactccta---tat 261
Query: 72 agcacttacattacattaagtgcaaaagtaatccagagattatttaaaataaagaaggat 131
|||| || |||| ||||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct: 262 agcagtttcattgcattaagggcaaaagtcatccagagatcatttaaaataaagaaggat 321
Query: 132 caggggatatggcccagag--acaatgcc-atgtgtgtgttcaaacattcacctacaaca 188
|||| | ||||||||| | | || ||| || ||| || ||| ||||||||||| ||||
Sbjct: 322 caggcaagatggcccaggggta-aa-gccaat-tgtttggtcagacattcacctataaca 378
Query: 189 ccagtgcttatgattttgggaggggcagagataggaagatgactgtggcttcctgaaagc 248
||||||| | || | |||||||||||||| || |||| ||||||||||||||||||||
Sbjct: 379 acagtgctcagga--tggggaggggcagagacagaaagaagactgtggcttcctgaaagc 436
Query: 249 cagc------------tcagcaagaaacccagtcacaagggtataatttatgtagga--- 293
||| |||||||||||||| |||| ||||| | || ||| | |||
Sbjct: 437 aagcctcactcctaggtcagcaagaaaccctgtcataagggaacaaatta-g--ggagtg 493
Query: 294 aaagagtagatcacactatacccttccctagcctctgaacttacctgtacagttctctat 353
|| ||| ||| |||||| |||| |||||| ||||||||| |||||||||||| ||| |||
Sbjct: 494 aaggagcagaacacactgtacctttccctggcctctgaatttacctgtacaggtctgtat 553
Query: 354 gcagactcacataaatatgattaaaatatgcaagaggttattttgcatagcttatat-tc 412
||| || |||||||||||||||||| ||| |||||||||| ||||||||| |||||| |
Sbjct: 554 gcacacacacataaatatgattaaagtatacaagaggttactttgcatagattatatgt- 612
Query: 413 aaaagcaatgttgttttagactagaaacctgaggac-tttatatcattatagtttctgga 471
||||||||||||||||||| ||||| |||||||||| |||||||||||| | | |||||
Sbjct: 613 aaaagcaatgttgttttagcctagagacctgaggacttttatatcattaggggtcctgga 672
Query: 472 gcaaactcccaagatatagatg---atgggtatatcttcttactgtgccaaggaaacctc 528
|||||||||| | ||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 673 gcaaactccccatatataga-gagaatgggtatatcttcttactgtgcaaaggaaacctc 731
Query: 529 agttaagtgtgtgtgtcagtgactccaaacagctttcctcctctatgttcct-ttatata 587
||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct: 732 agttaagtgtgtgtgtcagtgactccaaacagctttcctcctctaaattcctatt-tata 790
Query: 588 gcatagaatgctctgtaaataatgaaaatatgaaaacaaagcttttt 634
||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 791 gcacagaatgatctgtaaataatgaaactatgaaaacaaagcttttt 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1056
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1046
Effective search space: 672578
Effective search space used: 672578
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
