BAC Information

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BAC

Clone NameMSMg01-143L11
ChromosomeY (Build37)
Map Location 2,794,549 - 2,794,783
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143L11.T7 (MSMg01no143_l11.b1)MSMg01-143L11.TJ (MSMg01no143_l11.g1)
ACCAG347990AG347991
length772712
length of high quality
(start - end)
235 (434 - 668)631 (75 - 705)
definitionCHROMAT_FILE: MSMg01no143_l11.b1 PHD_FILE: MSMg01no143_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:20 2005CHROMAT_FILE: MSMg01no143_l11.g1 PHD_FILE: MSMg01no143_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTTTTTTGGGGGGGGGGGGGNNNNNNNCNCCCCTCCGNCCCCCCACCAA
CNNNNCNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCGGAACC
CGCNCGCGGAANNCCNGGTTGGCCGCCACGGGACAGAAAAGGNACAAGNC
GGNNNCCACCACNAACGGACCCCCAGNNCACCCACAACNCACANCCCCAG
GCCCCAAGAAAACNNNAAGGGNCNCCAANTCNCNAGCCNNCCGGCNNNCA
GCNAGGNGANAANCGGNNCAANCNCCGGCCCANAGCGAAAAAGNNCNCGG
NNNNNCTTGTGTAAAGTGGATTGTGAACCCAGAAGCATTAAAGGCAGGAG
TCCAATGAGGGTCACATGCTCTCTTTTTTTTTTTTAGNAACACCNCCANT
CCNCCACCANCANCCCACTGGGACCCCCACCTGAACCAGGANTAACCATC
TTTCAATAGTTCACTGACTCCCTCCACACAGACTTCTCCCTACCATGCTT
CCTCAAGAACTTTACTTCCTCAGGAACTCAGCTTCCTGGCCACCACAAAG
CATACTGAGTAACAGGGTTTGGACAGCAGGAAAACAATCTTAGCCAAGCC
CATTGCAGATTGGCCCTGTTTACACATTTCTACAAAGGGTGAGAGAGGAT
TTATCAGTCATCTGTCATCACAGTAGCAAAAAGGAGGTAGGATTATAGCT
TCCACTACTTTTTTTTATTTTTCCATTTTTCAAATTTGCCAGGCTAAACT
TGAAAGTAAGAAAGAAAAACCG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTATAAGCCCATGGCAAATGGAATA
GTTCAATGTGCTCATCACACCTTAAAGAATTGGCCTTTTATGACAAAACA
GTGGCAGTTATATCCCCCAAGGTCACCAAAGGCACATCTTGCCTTTACTT
TATTTGAACTAAATTTTTGGCAAACTGATATTAAAGGTCAGTCTGCAGCA
AATCACCACTGGCATCCAGTTACTACTAATTCGTATGCATTGATAAAATG
AAAGGACCCACTAACTAAGGATTGGAAGGGTCCAGATCCGATTCTAATCT
GGGGAAGGTACTCGGTTTGTGTTTTTTCACGAGAAGATGGAGTACAGAGG
CTGCCCAAGAGATCAACTTGTTAGCTGAACACAGATCCTGAATCTTCTTA
TAAGTATCACTCTGAGAACTAAAATTCCTCTTTTGCATAGAATTTAGTTG
GGGACTCAGCCTCCCAGAAAAGCTGTTTTCCTGCTACTCTCAGAGCTTTG
CAATTTGCAACTGAATAAAGTACCTGGACTTCCCTTAAAGAAGCTTTGCA
TTGCTACTTTCTCATTGTCTGGGTCTCTTTTTCTCAAGCAGGTCAATCAA
CATCCTCCAATCAGACTGCAGTGGGAGTGCATCCCTGCAAACAAAGGCTT
AAGGTGGCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_l11.b1 MSMg01no143_l11.b1 CHROMAT_FILE:
MSMg01no143_l11.b1 PHD_FILE: MSMg01no143_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:20 2005
         (235 letters)



>mm_chrY_2794349_2794983
          Length = 635

 Score =  387 bits (200), Expect = e-112
 Identities = 226/235 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccaggantaaccatctttcaatagttcactgactccctccacacagacttctccctac 60
           |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aaccaggattaaccatctttcaacagttcactgactccctccacagagacttctccctac 260

                                                                       
Query: 61  catgcttcctcaagaactttacttcctcaggaactcagcttcctggccaccacaaagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 catgcttcctcaagaactttacttcctcaggaactcagcttcctggccagcacaaagcat 320

                                                                       
Query: 121 actgagtaacagggtttggacagcaggaaaacaatcttagccaagcccattgcagattgg 180
           |||| ||||||||||||||||||||| ||||||||||||||||||||||||||  |||||
Sbjct: 321 actgtgtaacagggtttggacagcagcaaaacaatcttagccaagcccattgctcattgg 380

                                                                  
Query: 181 ccctgtttacacatttctacaaagggtgagagaggatttatcagtcatctgtcat 235
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgtttacacattcctacaaagggtgagagaggatttatcagtcatctgtcat 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)