Query= MSMg01no145_m13.b1 MSMg01no145_m13.b1 CHROMAT_FILE:
MSMg01no145_m13.b1 PHD_FILE: MSMg01no145_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:58 2005
(590 letters)
>mm_chrY_1271608_1272596
Length = 989
Score = 462 bits (239), Expect = e-134
Identities = 496/607 (81%), Gaps = 55/607 (9%)
Strand = Plus / Plus
Query: 11 tcagcctccttcagtctttctcaaattaaaccaatggttctgcagattctgtccattggt 70
|||||||||||||||||||||| |||| |||||| | ||| ||||||||||||| |||||
Sbjct: 189 tcagcctccttcagtctttctccaattcaaccaaagtttcagcagattctgtccgttggt 248
Query: 71 tgtttgcatacatctgcatctgactgttacacctgctcattatttcttcataagtacagt 130
|| ||||| |||||||||||||| |||| | ||||||||||| |||||| |||| ||||
Sbjct: 249 tggttgcagacatctgcatctgattgtttcgcctgctcattaggtcttcagaagtgcagt 308
Query: 131 catcctagcattcatattacaagtatctgaattcagaaacctacagaggctgtgtactgc 190
||| |||| ||||| ||||||| ||| ||||||||||||||| ||||||||| ||||||
Sbjct: 309 catgctagtattcacattacaaatatgtgaattcagaaacctgcagaggctgcctactgc 368
Query: 191 aagcaggtcttctgcaaaagcaat-----atataatatcagtactaaaattgatatcagt 245
|| ||||||||||||||||||||| |||||| || | ||| || || | |||||
Sbjct: 369 aatcaggtcttctgcaaaagcaatacacgatataa-at-a--actgaattttctgtcagt 424
Query: 246 gctctacaatattctattctatgtgatgaaat----------atctctctctct------ 289
||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 425 gctctacaa-----tattctatgtgatgaaatctctctctcaatctctctctctctctct 479
Query: 290 -----------t-tctctctctctctctcaatatatatattcctctaacacttagtatga 337
| ||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 480 ctctctctctctctctctctctctctctca--atatctactcttctaacacttagtatga 537
Query: 338 ataaacactctcttatattctctcctacaaaggggatgatatt-gacatgtcatctgcaa 396
|||| | |||||||| |||||| ||||| |||| |||||||| || |||||||||||||
Sbjct: 538 ataatgattctcttatcttctctgctacatagggcatgatattgga-atgtcatctgcaa 596
Query: 397 cattcattcactttcctacacagtttgtgctttctcttagcaatcaactactatctaaa- 455
||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||
Sbjct: 597 cattcattcactttcctactcagtttgtgctttctcttaggaatcaactaatatc-aaag 655
Query: 456 tcacacatgcactcagattacaaagtaaggtatctgagctcatgca-aactgttattctg 514
|||||||| ||||||||||||||| |||||||||| ||||||| | |||||||||||||
Sbjct: 656 tcacacattcactcagattacaaaataaggtatcttagctcat--ataactgttattctg 713
Query: 515 agtcagagtaggggga--ggacaattccaaactgtagttacgtcaaagagtatagacttt 572
||| ||||| || || ||||| |||||| ||||||||| | |||||||| | ||||
Sbjct: 714 agtgagagt--ggagaaaggacacttccaatgtgtagttacacccaagagtatggccttt 771
Query: 573 aacaact 579
|| ||||
Sbjct: 772 aaaaact 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 989
Length adjustment: 10
Effective length of query: 580
Effective length of database: 979
Effective search space: 567820
Effective search space used: 567820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_m13.g1 MSMg01no145_m13.g1 CHROMAT_FILE:
MSMg01no145_m13.g1 PHD_FILE: MSMg01no145_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:59 2005
(516 letters)
>mm_chrY_1655583_1656493
Length = 911
Score = 478 bits (247), Expect = e-139
Identities = 453/523 (86%), Gaps = 19/523 (3%)
Strand = Plus / Minus
Query: 1 aacaattttggaccctatgaaagtaatggattgtccaaatgctcccggactgagaatctt 60
||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 711 aacaagtttggaccctatgaaagtaatagattgcccaaatgctcctggactgagaatctt 652
Query: 61 ggggaagct-ctagggtttttcttaatctgcaatgccatttagacattagagcaagcaga 119
|||||| || |||||| |||||||||||||||||| |||||||| ||| ||||||| ||
Sbjct: 651 ggggaa-ctgctagggattttcttaatctgcaatggcatttagatattggagcaagtgga 593
Query: 120 gatgatttgctccttctcttaggcaatcagattttatcctggaagacaaccattgtgagc 179
|||| |||||||||||| ||||||| ||||| ||| || |||||||||| | ||||||||
Sbjct: 592 gatgctttgctccttcttttaggcactcaga-tttgtcttggaagacaaactttgtgagc 534
Query: 180 -cttgagagggtttgctggaggagaagggatattgacagtgctctacccaacctgcaagg 238
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct: 533 atttgagagggtttgctggaggagaagggatattgacagtgctctaaccaaactgcatgg 474
Query: 239 cacacagctagaccttgttccctctgat-gcatagaagtgtctgatggttttag-atggg 296
||||||||||||| |||||||||||| | |||||||| | ||||||||| || | |||
Sbjct: 473 cacacagctagactttgttccctctg-tagcatagaattttctgatggtgtt-gcatg-- 418
Query: 297 attcttgctgaggacagaatctgaggaaaggttcctggtagagaaac-gaaccgcagtta 355
|| |||||||||||||| |||||||| ||| |||| |||||| |||| | | |||||||
Sbjct: 417 atccttgctgaggacaggatctgaggcaagtttccaggtaga-aaactgtagtgcagtta 359
Query: 356 tacaacctag-aaagtatataccattgatcatcgtgagcctgaaacagaaagcacccaag 414
||||| ||| ||| |||| |||||| | |||||||||||||| | || ||||| | |
Sbjct: 358 tacaaggtagcaaa-tataaaccatt-a--atcgtgagcctgaagctgagagcactga-g 304
Query: 415 -cattggacctaatgtatgattggtgagacagattgaagagattttgtttgttttgaatt 473
|||||||||||||| || |||| ||||||| ||||||| |||||||||||||||||||
Sbjct: 303 acattggacctaatgcataattgctgagacactttgaagacattttgtttgttttgaatt 244
Query: 474 ctctgtataggtatggatacattgtctcatggtaagggggagt 516
||||||||||||||| |||||||||| ||||| ||| ||||||
Sbjct: 243 ctctgtataggtatgaatacattgtcccatgggaagagggagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 911
Length adjustment: 10
Effective length of query: 506
Effective length of database: 901
Effective search space: 455906
Effective search space used: 455906
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
