Query= MSMg01no147_j08.b1 MSMg01no147_j08.b1 CHROMAT_FILE:
MSMg01no147_j08.b1 PHD_FILE: MSMg01no147_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:12 2005
(622 letters)
>mm_chrY_1271575_1272595
Length = 1021
Score = 485 bits (251), Expect = e-141
Identities = 498/607 (82%), Gaps = 55/607 (9%)
Strand = Plus / Plus
Query: 44 tcagcctccttcagtctttctcaaattaaaccaatggttctgcagattctgtccattggt 103
|||||||||||||||||||||| |||| |||||| | ||| ||||||||||||| |||||
Sbjct: 222 tcagcctccttcagtctttctccaattcaaccaaagtttcagcagattctgtccgttggt 281
Query: 104 tgtttgcatacatctgcatctcactgtttcacctgctcattatttcttcataagtacagt 163
|| ||||| |||||||||||| | |||||| ||||||||||| |||||| |||| ||||
Sbjct: 282 tggttgcagacatctgcatctgattgtttcgcctgctcattaggtcttcagaagtgcagt 341
Query: 164 catcctagcattaatattacaagtatctgaattcagaaacatacagaggctgtgtactgc 223
||| |||| ||| | ||||||| ||| ||||||||||||| | ||||||||| ||||||
Sbjct: 342 catgctagtattcacattacaaatatgtgaattcagaaacctgcagaggctgcctactgc 401
Query: 224 aagcaggtcttctgcaaaagcaat-----atataatataagtactaaaattgatatcagt 278
|| ||||||||||||||||||||| |||||| ||| ||| || || | |||||
Sbjct: 402 aatcaggtcttctgcaaaagcaatacacgatataa-ata---actgaattttctgtcagt 457
Query: 279 gctctacaatattctattctatgtgatgaaat----------atctctctctctct---- 324
||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 458 gctctacaa-----tattctatgtgatgaaatctctctctcaatctctctctctctctct 512
Query: 325 -------------t-tctctctctctctcaatatata-tattcctttaacacttagtatg 369
| ||||||||||||||||||| || | ||| ||||||||||||||
Sbjct: 513 ctctctctctctctctctctctctctctcaatatctactcttc---taacacttagtatg 569
Query: 370 aataaagactctcttatattctctcctacaaaggggatgatattggcatgtcatctgcaa 429
||||| || |||||||| |||||| ||||| |||| |||||||||| |||||||||||||
Sbjct: 570 aataatgattctcttatcttctctgctacatagggcatgatattggaatgtcatctgcaa 629
Query: 430 cattcattcactttcctacacagtttgtgctttctcttagcaatcaactaatatctaaa- 488
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 630 cattcattcactttcctactcagtttgtgctttctcttaggaatcaactaatatc-aaag 688
Query: 489 tcacacatgcactcagattacaaagtaaggtatctgagctcatgca-aactgttattctg 547
|||||||| ||||||||||||||| |||||||||| ||||||| | |||||||||||||
Sbjct: 689 tcacacattcactcagattacaaaataaggtatcttagctcat--ataactgttattctg 746
Query: 548 agtcagagtaggggga--ggacaattccaaactgtagttacatccaagagcatggacttt 605
||| ||||| || || ||||| |||||| |||||||||| ||||||| |||| ||||
Sbjct: 747 agtgagagt--ggagaaaggacacttccaatgtgtagttacacccaagagtatggccttt 804
Query: 606 aacaact 612
|| ||||
Sbjct: 805 aaaaact 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space: 618732
Effective search space used: 618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_j08.g1 MSMg01no147_j08.g1 CHROMAT_FILE:
MSMg01no147_j08.g1 PHD_FILE: MSMg01no147_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:12 2005
(588 letters)
>mm_chrY_2780267_2781254
Length = 988
Score = 936 bits (484), Expect = 0.0
Identities = 572/622 (91%), Gaps = 36/622 (5%)
Strand = Plus / Plus
Query: 1 ctgatgggcaatggttatgggttgggagtgaatgctggaccaagactcttctctacgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctgatgggcaatggttatgggttgggagtgaatgctggaccaagactcttctctaagaga 260
Query: 61 acttctgagcaggtgaagaagactatgctaaacagatttgagctcctaaaattaatttta 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 acttctgagcaggtgaagaagactatgctaaacagttttgagctcctaaaattaatttta 320
Query: 121 taaaaataagaagttaataagtcagccatggtggtacatgcatttaatcccagaactcag 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 taaaaataagaagttaataagtcagccatggtggtacacacatttaatcccagaactcag 380
Query: 181 aaggc-aaggacaggcagatttctaaattagagaccagcctggtctacaaagtgagttcc 239
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggcaaaggataggcagatttctaaattagagaccagcctggtctacaaagtgagttcc 440
Query: 240 agggcagtcagtgctatagagaggaaccctgtctcaacaac------------------- 280
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 agggcagccagtgctatagagaggaaccctgtctcaacaacaacaacaacagcaacaaga 500
Query: 281 -------aaacaacaacaacaacatcaagtaaaagaaaacaaacgaaaatcaaacgaaaa 333
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 acaacaaaaacaacaacaacaacagcaagtaaaagaaaacaaacgaaaatcaaacgaaaa 560
Query: 334 acaaacaaaacagaaatacaaacaaaaaataacaaaacaaacaatcaaatggagaagtta 393
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaacaaaatagaaatacaaacaaaaaataacaaaacaaacaatcaaatggagaagtta 620
Query: 394 ataggaagtggtagtgacccataactttaatcatagtactcaagaggcagagtgaggcag 453
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 ataggaagtggtggtgacccataactttaatcatagtactcaagaggcagagcgaggcag 680
Query: 454 accttagtgagagaaagacaagtctggtctacacagtgagtttcctgacagccaaatcta 513
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accttagtgagataaaggctagtctggtctacacagtgagtttcctgacagccaaatcta 740
Query: 514 aacatacagaaactcaaataaaattaaccaagcaagcaaactaacag-------ctaaga 566
||||||||||||||||||||||||||||||||||||||||| || || | ||||
Sbjct: 741 aacatacagaaactcaaataaaattaaccaagcaagcaaac-aa-agaaacaaacaaaga 798
Query: 567 aacaaagaaacaagggaaacaa 588
||||||||||||||||||||||
Sbjct: 799 aacaaagaaacaagggaaacaa 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
