Query= MSMg01no148_b24.b1 MSMg01no148_b24.b1 CHROMAT_FILE:
MSMg01no148_b24.b1 PHD_FILE: MSMg01no148_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:55 2005
(656 letters)
>mm_chrY_2432582_2433642
Length = 1061
Score = 406 bits (210), Expect = e-117
Identities = 499/610 (81%), Gaps = 40/610 (6%)
Strand = Plus / Plus
Query: 65 gttcaaaaagaacaaaaatgcaatgcaag-ttcaggatattgatcacctatccatgcatc 123
|||||| ||||| |||||| |||||| || |||||||| |||||| || |||| ||||||
Sbjct: 265 gttcaagaagaagaaaaattcaatgc-agtttcaggatcttgatc-cccatccctgcatc 322
Query: 124 ttaaacccataggttctagccagaatgtaaggtcagaagtctaaacttcacctatactac 183
|||| |||||||| | || ||||| || |||||||||||||||||||||||||||||||
Sbjct: 323 ttaatcccatagggtggagtcagaaggttaggtcagaagtctaaacttcacctatactac 382
Query: 184 aactaactctgaagatatctagcaatctccagttcctttctggtacttacccacaccaag 243
||| |||| ||||||| |||||| |||||| ||| || ||||||||||| |||||||||
Sbjct: 383 aaccaactgtgaagatttctagccatctcctgtttctgtctggtacttagtcacaccaag 442
Query: 244 tctgcattcaggaata-t---agtctagtgtgagatagtgccagcagttaattgcaaaat 299
||||| || ||| ||| | |||||||||||||||||||||||||| | |||||||||
Sbjct: 443 tctgccttaaggcatactgcaagtctagtgtgagatagtgccagcagatgattgcaaaaa 502
Query: 300 cccactctgagttgagttgtatgtaaactcagacatctgtaatatagacacacatg--ca 357
|||||| || ||||| ||||| ||||| | |||||||| ||||||||||||||| | ||
Sbjct: 503 cccactatgtgttgacttgtacgtaaaatgagacatctataatatagacacacacgtaca 562
Query: 358 tattcacaaatactcacacaaagaggcaagaagtagaggagctgaatcttagaaatcctc 417
|| |||| ||||||||| ||||||| ||||||| ||| |||||| |||||| || ||||
Sbjct: 563 ta--cacacatactcacagaaagaggtaagaagtggagaagctgagtcttaggaaccctc 620
Query: 418 aaggaagagaatga----aaatcttgtaaggcacagaggtaagagaaaaactgtgtcttt 473
|||||||||| || |||||||||||||||||||||| |||||||| |
Sbjct: 621 aaggaagaga--gagtagaaatcttgtaaggcacagaggt----------ctgtgtctat 668
Query: 474 ctgcacaaaatcaggccattctgtcttccatcactgaac-gggaaggc-tcactatcact 531
|||||||||||| || |||||| ||||||| | || | |||| ||| |||||||| ||
Sbjct: 669 ctgcacaaaatcgggttattctggcttccatta-tggagtgggagggcctcactatccct 727
Query: 532 tatca--ct-atctgataaggtatagacagttgatgaaggatgaatagtcagttttcatc 588
|| || |||||| || |||| |||||||| || ||| | | ||||||||||||||
Sbjct: 728 ---cattcttatctgagaaagtatggacagttgttgggggagggagagtcagttttcatc 784
Query: 589 aaaggtattgactttgaaggtgatagattgttcattctctactggaagc--cagatgtcc 646
|||||||| | ||||||| ||||||| |||| ||| ||||| ||| ||| || |||||
Sbjct: 785 aaaggtatggcctttgaaagtgataggttgtccatgctctagtggtagctcca--tgtcc 842
Query: 647 aagagtttat 656
||||||||||
Sbjct: 843 aagagtttat 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1061
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1051
Effective search space: 678946
Effective search space used: 678946
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_b24.g1 MSMg01no148_b24.g1 CHROMAT_FILE:
MSMg01no148_b24.g1 PHD_FILE: MSMg01no148_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:55 2005
(621 letters)
>mm_chrY_1655577_1656592
Length = 1016
Score = 516 bits (267), Expect = e-150
Identities = 510/597 (85%), Gaps = 26/597 (4%)
Strand = Plus / Minus
Query: 32 caaagtcaccttggtgggaccaggagcagttcacctgcctcttcaggttgcttttgttta 91
|||||||||||||||||||||| | || ||||||||||| ||||||||||||
Sbjct: 857 caaagtcaccttggtgggaccattataagatcacctgcctc-------tgcttttgttta 805
Query: 92 actgcctttggagacagcagttggagctgctgctacctgctggaaaggtggcttctaatg 151
|||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct: 804 ggtgccattggagacagcagttggagcagctgctacctgctggtgagttggcttctaatg 745
Query: 152 ggacaattcattggtctgtagaattcaaacaattttggaccctatgaaagtaatggattg 211
| ||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 744 gaacaatgcattggtctgcagaattcaaacaagtttggaccctatgaaagtaatagattg 685
Query: 212 tccaaatgctccgggactgagaatcttggggaagct-ctaggttttttcttaatctgcaa 270
||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct: 684 cccaaatgctcctggactgagaatcttggggaa-ctgctagggattttcttaatctgcaa 626
Query: 271 tgtcatttagacattagagcaagcagagatgatttgctccttctcttaggcaatcagatt 330
|| |||||||| ||| ||||||| |||||| |||||||||||| ||||||| ||||| |
Sbjct: 625 tggcatttagatattggagcaagtggagatgctttgctccttcttttaggcactcaga-t 567
Query: 331 ttatcctggaagaccaccgttgtgagc-cttgagagggtttgctggaggagaagggatat 389
|| || |||||||| | | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 566 ttgtcttggaagacaaactttgtgagcatttgagagggtttgctggaggagaagggatat 507
Query: 390 tgacagtgctctacccaacctgcaaggcacacagctagaccttgttccctctgat-gcat 448
||||||||||||| |||| ||||| ||||||||||||||| |||||||||||| | ||||
Sbjct: 506 tgacagtgctctaaccaaactgcatggcacacagctagactttgttccctctg-tagcat 448
Query: 449 agaagtgtctgatggtattag-atgggattcttgatgaggacagaatctgaggaaaggtt 507
|||| | ||||||||| || | ||| || |||| ||||||||| |||||||| ||| ||
Sbjct: 447 agaattttctgatggtgtt-gcatg--atccttgctgaggacaggatctgaggcaagttt 391
Query: 508 cctggtagagaaa-tgaagtgcagttatacaacctag-aaagtatataccattgatcatt 565
|| |||||| ||| || ||||||||||||||| ||| ||| |||| |||||| |||
Sbjct: 390 ccaggtaga-aaactgtagtgcagttatacaaggtagcaaa-tataaaccattaatc--- 336
Query: 566 gtgagcctgaaacagaaagcacccaag-cattggacctaatgtatgattggtgagac 621
||||||||||| | || ||||| | | |||||||||||||| || |||| ||||||
Sbjct: 335 gtgagcctgaagctgagagcactga-gacattggacctaatgcataattgctgagac 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1016
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1006
Effective search space: 614666
Effective search space used: 614666
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
