BAC Information

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BAC

Clone NameMSMg01-150M04
ChromosomeY (Build37)
Map Location 1,394,619 - 1,395,111
singlet/doubletsinglet
Overlap geneZfy2
Upstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150M04.T7 (MSMg01no150_m04.b1)MSMg01-150M04.TJ (MSMg01no150_m04.g1)
ACCAG353111AG353112
length730740
length of high quality
(start - end)
495 (48 - 542)532 (75 - 606)
definitionCHROMAT_FILE: MSMg01no150_m04.b1 PHD_FILE: MSMg01no150_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:24 2005CHROMAT_FILE: MSMg01no150_m04.g1 PHD_FILE: MSMg01no150_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAAAAATCTTATCATAAAACCATGAGAGGTCATATCTAAAAGAA
TAGTAAATAATAAATTGAATAATAGACATTGTGAAAAGATCACATCCCTA
GTAAGAAATAGAGGTTACATTAACCTCCGTATGTGTTCTTCCAAAAATTG
TAAATATATCAGACATAAGTAAATATACCAATAGGTTTCAAAATAGATAA
GTTTTATTTCAAATATATACAAACCATTTAAATGTTGCAGACCAGATTAG
TTATATTCCTTTTTTAGTAAGATTGTTGACAATTAAAAAGGGAATATCAT
AGCAAACAAATCAGTGTTTTTAAGTTTTTTTGGGCAGAATATGGTGTTCC
ACAGGTTTGATTTTACCACTTGGGAGGTAAAGGCAGGCATATTTTTGTGA
ATTTGAGCCACTTTTAATCTCCTACCAAGTTCCAGGCCAACCAGACAAAC
ATACTATGACCTTGTGTTTCTAAGAAAAAACAAACAAACAAACAAACAAA
CAAAAAATCAACATTGTTCTTTGGTTCTACAATCATGAGTCTAGGTTTTA
GCAGCTGAGCCATCTCTCCCATCCTGGCTGTACAATAATTTTACTTAATT
ATTTTAATTAACTGTTTGCTTAACTATTTTTGTGGCATTTCTCTTATATA
TTAACATCCAACTTGTAGTACTACACATGG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTTCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTTTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGGTCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAA
GGACACATGCTCCACTATGTCCACAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAGG
TGGTACATCTACACAATGGAGTACTACTCAGCTAGTAAAACGTATGAATT
TATGAAATTCCTCGCCAAATGGACGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATATAATTTCCT
AAACACCTGAAACTCAAGAAAAATTAAGACTGTAGTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_m04.b1 MSMg01no150_m04.b1 CHROMAT_FILE:
MSMg01no150_m04.b1 PHD_FILE: MSMg01no150_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:24 2005
         (495 letters)



>mm_chrY_1394568_1395462
          Length = 895

 Score =  946 bits (489), Expect = 0.0
 Identities = 492/493 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctaaaaaatcttatcataaaaccatgagaggtcatatctaaaagaatagtaaata 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gaattctaaaaaatcttatcataaaaccatgagaggtcatatctaaaagaatagtaaata 485

                                                                       
Query: 63  ataaattgaataatagacattgtgaaaagatcacatccctagtaagaaatagaggttaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ataaattgaataatagacattgtgaaaagatcacatccctagtaagaaatagaggttaca 425

                                                                       
Query: 123 ttaacctccgtatgtgttcttccaaaaattgtaaatatatcagacataagtaaatatacc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttaacctccgtatgtgttcttccaaaaattgtaaatatatcagacataagtaaatatacc 365

                                                                       
Query: 183 aataggtttcaaaatagataagttttatttcaaatatatacaaaccatttaaatgttgca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aataggtttcaaaatagataagttttatttcaaatatatacaaaccatttaaatgttgca 305

                                                                       
Query: 243 gaccagattagttatattccttttttagtaagattgttgacaattaaaaagggaatatca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaccagattagttatattccttttttagtaagattgttgacaattaaaaagggaatatca 245

                                                                       
Query: 303 tagcaaacaaatcagtgtttttaagtttttttgggcagaatatggtgttccacaggtttg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tagcaaacaaatcagtgtttttaagtttttttgggcagaatatggtgttccacaggtttg 185

                                                                       
Query: 363 attttaccacttgggaggtaaaggcaggcatatttttgtgaatttgagccacttttaatc 422
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 attttagcacttgggaggtaaaggcaggcatatttttgtgaatttgagccacttttaatc 125

                                                                       
Query: 423 tcctaccaagttccaggccaaccagacaaacatactatgaccttgtgtttctaagaaaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tcctaccaagttccaggccaaccagacaaacatactatgaccttgtgtttctaagaaaaa 65

                        
Query: 483 acaaacaaacaaa 495
           |||||||||||||
Sbjct: 64  acaaacaaacaaa 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)