Query= MSMg01no157_m24.b1 MSMg01no157_m24.b1 CHROMAT_FILE:
MSMg01no157_m24.b1 PHD_FILE: MSMg01no157_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:14 2005
(327 letters)
>mm_chrY_2890475_2891203
Length = 729
Score = 414 bits (214), Expect = e-120
Identities = 292/318 (91%), Gaps = 2/318 (0%)
Strand = Plus / Plus
Query: 5 gaattcactattctccgtttgcagttgtaaatgctcgtgagagcaacgaactcccttttt 64
||||| ||||||||| |||| |||||||| |||||||||||||||||||| ||||| |
Sbjct: 205 gaatttactattctcggtttacagttgtacatgctcgtgagagcaacgaaatccctctcc 264
Query: 65 cagatggaaaagggttactgacagacatgtcaggagaaaccggctgccaccctttgggac 124
||||||||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct: 265 cagatggaagagggttactgacagacatgtgaggagaaaccggctgccagcctgtgggac 324
Query: 125 atccctggagttctgagggagttctagggatacctggagatctcctatcagtgtgccaag 184
||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 325 atcccaggagttctgagggagttccagggatacctggagatctcctatcagggtgccaag 384
Query: 185 tgagagtgtgctcactcggctgtctgtttctgttactgggtgccaagtgagtgtgtgctt 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 agagagtgtgctcactcggttgtctgtttctgttactgggtgccaagtgagtgtatgctc 444
Query: 245 tcttggccatcttattggggcctggtcttggttattgtaatcttttt-tgtgtatatgtt 303
||| |||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 445 tctcagccatcttattggggcctggtcttggttattgtaatctttttctgggtatatatt 504
Query: 304 -tttttttccatgtatgt 320
||||||||| |||||||
Sbjct: 505 gtttttttccctgtatgt 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 729
Length adjustment: 9
Effective length of query: 318
Effective length of database: 720
Effective search space: 228960
Effective search space used: 228960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_m24.g1 MSMg01no157_m24.g1 CHROMAT_FILE:
MSMg01no157_m24.g1 PHD_FILE: MSMg01no157_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:14 2005
(300 letters)
>mm_chrY_1796190_1796888
Length = 699
Score = 170 bits (88), Expect = 7e-47
Identities = 217/266 (81%), Gaps = 18/266 (6%)
Strand = Plus / Plus
Query: 28 atgtctccttacatcacatagatattttttacagt-g-cat-at-aagcacatatatttt 83
|||||| || |||||||| | ||||||| ||| || | ||| || || ||||||||||||
Sbjct: 231 atgtcttctaacatcacaaaaatattttctacggtagacataatgaa-cacatatatttt 289
Query: 84 agaatatactgaaacttaaaaatgtaaattaaaaaaaaaaacaaaaa--cctctaccaac 141
|||| |||| ||||||| |||||| |||| || ||||| ||||||| ||
Sbjct: 290 agaaaatacagaaacttgaaaatggaaatggaa---------aaaaattcctctactgac 340
Query: 142 -ttcaaattaaaaaacacatttattttagaattctctagcatactcgcaatttcctgtat 200
|| |||| ||||||||||||||||||||||||||||| || | ||||||||| |||
Sbjct: 341 ttttgaatttaaaaacacatttattttagaattctctagggtatttgcaatttcccatat 400
Query: 201 tccctactcatgatgtccatatgttagcatcttacaaatttgtatgacaataatgaggag 260
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 401 accctactcatgacgtccatatgttagcatcttacaaatttgtatggcaataatgaggag 460
Query: 261 aaaataaaatttgtaaggaaaaaaaa 286
|| ||| ||| |||| ||||||||
Sbjct: 461 taattaacctttttaag-aaaaaaaa 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 699
Length adjustment: 9
Effective length of query: 291
Effective length of database: 690
Effective search space: 200790
Effective search space used: 200790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
