Query= MSMg01no166_a12.b1 MSMg01no166_a12.b1 CHROMAT_FILE:
MSMg01no166_a12.b1 PHD_FILE: MSMg01no166_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:24 2005
(315 letters)
>mm_chrY_1792282_1792996
Length = 715
Score = 255 bits (132), Expect = 2e-72
Identities = 195/218 (89%), Gaps = 10/218 (4%)
Strand = Plus / Minus
Query: 5 gaattcagaagcca-gcaga-gttcgtggactgcaagcaggtcttctgaaaaagcaatgc 62
|||||||| || || ||||| ||| | ||||||||||||||||||||| ||| |||||||
Sbjct: 329 gaattcaggag-cacgcagaggtt-gcggactgcaagcaggtcttctgcaaaggcaatgc 272
Query: 63 atgatataattacctgaattttctggcagtgctcttcaatattgtgttctacgtgatgca 122
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 271 atgatataattacctgaattttctgtcagtgctcttcaatattgtattctacgtgatgca 212
Query: 123 atattccactctctttctctatctctgtctctgtctctgtccctctctgtctctgtctct 182
||||||| |||||||||||| |||||||| | |||||||| ||||| ||||||||||
Sbjct: 211 atattcctctctctttctct--ctctgtctgtctctctgtctgtctct--ctctgtctct 156
Query: 183 ctctgtctctttgtctct--ctctctctgtctctctgt 218
|||||||||| ||||||| |||||||| |||||||||
Sbjct: 155 ctctgtctctctgtctctgtctctctctctctctctgt 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_a12.g1 MSMg01no166_a12.g1 CHROMAT_FILE:
MSMg01no166_a12.g1 PHD_FILE: MSMg01no166_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:24 2005
(644 letters)
>mm_chrX_53386839_53387887
Length = 1049
Score = 408 bits (211), Expect = e-118
Identities = 488/593 (82%), Gaps = 36/593 (6%)
Strand = Plus / Minus
Query: 12 tgtaatatttactttaaacaattcatacatttacacctcacagca-cttcttcataactg 70
|||| ||| |||||| ||||||||||||||||| ||| ||||| | || |||||||||
Sbjct: 1046 tgtattatgtacttttaacaattcatacatttataccccacagtagtttattcataact- 988
Query: 71 tactacca---ttgctgagatccttcttcttcccaaatggtccttctattatttttataa 127
|| ||| ||||||||| ||||||| |||||| ||||||| || ||| |||||| |
Sbjct: 987 --ctcccactcttgctgagacccttctttttcccagatggtccccctctta-ttttatga 931
Query: 128 tggttctccttttctttgtgtgtatatctgggaacatctcattcaggtggttgtattgta 187
|| ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct: 930 tgtttctccttttctttgtgtgtatatctgggaagatctcatgcaggtggtcctattgtt 871
Query: 188 ctagttgctatgtttttgtgtttacaaggtctaaagg--accacaatctggtcttgaact 245
|||||||||||| |||||| | ||||||||| ||| |||| | |||| ||||||||
Sbjct: 870 ttagttgctatgtgtttgtgatcacaaggtctcgaggtcacca--agctgggcttgaact 813
Query: 246 acacatataagagcatctg-----accctgaattactctttttcctgaatctacttctcc 300
| | ||||| || | || ||| |||||| || | | |||||||||||||||||
Sbjct: 812 aaatatata---gc-tgtgtctttaccttgaattgctgatctccctgaatctacttctcc 757
Query: 301 agtcaagggatcacaaacaccacttttgaagtactctattgaaatgggaaaaaatt---g 357
||| |||||||||||||||| ||||||||||||| |||||||| ||| |||||| |
Sbjct: 756 agtgaagggatcacaaacactacttttgaagtacactattgaagtggcaaaaaa--aaag 699
Query: 358 aaaatatta-caccgtatcttcatctgtttctacctgaggtgatatattctcatctttgt 416
||||||| | | || |||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct: 698 aaaatat-agccccatatcttcatctgcttctatgtgaggcgacatattctcatctttgt 640
Query: 417 caaatgctgggctctgtactatatggacaacagaaaatggaaacata-a---tatgctat 472
||||||||||||||| || | ||| ||||| |||||||||||||||| | ||||||||
Sbjct: 639 caaatgctgggctctttattgtattgacaatagaaaatggaaacatataaagtatgctat 580
Query: 473 attagtaaaagggaataaagtattaatgatttgaatttctcaggaaatactgcccaggtg 532
|||||||| || |||||||||||| ||||||| ||||| | ||||| |||||||| |||
Sbjct: 579 attagtaatagttaataaagtattattgatttgcatttccctggaaaaactgcccatgtg 520
Query: 533 aatttttgaaacagcttttagaaatgacataattacgtac--atgaaatccag 583
| ||| ||||||||||||||||||||| |||||||| || | |||||||||
Sbjct: 519 agtttctgaaacagcttttagaaatgaaataattac--acccaggaaatccag 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1049
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1039
Effective search space: 658726
Effective search space used: 658726
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
