BAC Information

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BAC

Clone NameMSMg01-166F16
ChromosomeY (Build37)
Map Location 1,655,831 - 1,656,373
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166F16.T7 (MSMg01no166_f16.b1)MSMg01-166F16.TJ (MSMg01no166_f16.g1)
ACCAG364205AG364206
length800746
length of high quality
(start - end)
244 (80 - 323)548 (77 - 624)
definitionCHROMAT_FILE: MSMg01no166_f16.b1 PHD_FILE: MSMg01no166_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:49 2005CHROMAT_FILE: MSMg01no166_f16.g1 PHD_FILE: MSMg01no166_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCC
GCGGAATTCACTAAAACTCCGGGAATTTGGGGCACCTGTGAGGAATTTTT
TTTCCTGATTTGATTATGTGAAATAGGAAGACCAACCCCAAATGTAGATC
GTTTGTTCTGTTGTAGAAACAACTGTAAAATATAAATTTCATTGATGTCA
GTTTTTTTTAATAAAAGTGTGTAGCTAGGACTAAATTCTAGTAGTTACAA
TCAAGATAGTTTTTATGATCCTACACTGTTTCTGTCTTTTATTACAGTGT
TTCCTGAACACTGAGGTGGAGATTTTATGTTGACCTCCCTTTTAGGACTG
AATGTTCATAATTTCCCTCATTTTTTGCATATTCCCCCGCCTGTTATACC
ACCAATTTATATGTTTTTTCCCCCCCTATTTTTTACAAATATATTCATTT
CCCTCTCCCCCCCACCACCTTTTTTTTCCGCCCCCAAATTATTAACTTTT
CTCCTTTTTCACCCCCCCCCCTTTTTTTTTATTTCCCATACCTTCTCCCC
CTTTTCCCCCACCTTTTTTTTTTTTCCCCCCTTTTTTTTTTTCTCCTATG
CTTTTCCCACTTTCCACTTTATCGCTTACGCCCTTTTTTTCCCCCCTTTT
TTCCCCCTATTATTCCCCCTTCCCCCCTCTTTTTTTTTCCCCCCCCTTCC
CCCATTACTTTTTCCCCCATTTCTATATTCCCTCCATACATTCTAATACC
CCCTATTTCAACCCTCCTCCCTTTTTATTTTCCCCACCTTTTTACCCCAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAATAAACAAAATCTCTTCAATC
TGTCTCACCAATCATACATTAGGTCCAATGCTTGGGTGCTTTCTGTTTCA
GGCTCACAATGATCAATGGTATATACTTTCTAGGTTGTATAACTGCACTT
CATTTCTCTACAGGAACCTTTCCTCAGATTCTGTCCTCATCAAGAATCCC
ATCTAATACCATCAGATACTTCTATGCATCAGAGGGAACAAGGTCTAGCT
GTGTGCCTTGCAGGTTGGGTAGAGCACTGTCAATATCCCTTCTCCTCCAG
CAAACCCTCTCAAGGCTCACAACGGTTGTCTTCCAGAATAAAATCTGATT
GCCTAAGAGAAGGAGCACACCATCTCTGCTTGCTCTAATGTCTAAATGAC
ATTGCAGATTAAGAAAAAACATGGAGCTTCCCTAAGATTCTCAGTCCGGA
AGCATTTGGACAATCCATTACTTTCATAGGGTCCAAAAATGTTTGAATTC
TACAGACCAATGAATTGTCCCATTAGAAGCCAACTTTCCAGCAGGTAGCA
GCAGCTCCAACTGTTGTCTCCAAAGGCAGTTAAACAAAAGCAACCTGAAT
AGGCAGGTGAACTGCTTCTGGTCCCACCAAGGTGACTTTTGCTTCCTGTG
GCAAGGTTTCAATTACTTCCTGGGATATACCTGTTTTGTCGCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_f16.g1 MSMg01no166_f16.g1 CHROMAT_FILE:
MSMg01no166_f16.g1 PHD_FILE: MSMg01no166_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:50 2005
         (548 letters)



>mm_chrY_1655631_1656574
          Length = 944

 Score =  453 bits (234), Expect = e-131
 Identities = 474/558 (84%), Gaps = 26/558 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaataaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatg-cttgg 59
           |||| ||||||||| |||||||  ||||||| |||| || |||||||||||||| | |  
Sbjct: 201 aaaacaaacaaaatgtcttcaaagtgtctcagcaattatgcattaggtccaatgtc-tca 259

                                                                       
Query: 60  gtgctttctgtttcaggctcacaatgatcaatggtatatacttt-ctaggttgtataact 118
           ||||| || | |||||||||||   ||| |||||| |||| ||| |||  ||||||||||
Sbjct: 260 gtgctctcagcttcaggctcac---gattaatggtttata-tttgctaccttgtataact 315

                                                                       
Query: 119 gcacttca-tttctcta-caggaacctttcctcagattctgtcctcatcaagaatcccat 176
           ||||| || ||| |||| | |||| ||| |||||||| ||||||||| |||| ||  |||
Sbjct: 316 gcactacagttt-tctacctggaaacttgcctcagatcctgtcctcagcaaggat--cat 372

                                                                       
Query: 177 -ctaataccatcagatacttctatgc-atcagagggaacaaggtctagctgtgtgccttg 234
            | || ||||||||| | |||||||| | |||||||||||| ||||||||||||||| ||
Sbjct: 373 gc-aacaccatcagaaaattctatgcta-cagagggaacaaagtctagctgtgtgccatg 430

                                                                       
Query: 235 caggttgggtagagcactgtcaatatcccttctcctccagcaaaccctctcaag-gctca 293
           ||| |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 431 cagtttggttagagcactgtcaatatcccttctcctccagcaaaccctctcaaatgctca 490

                                                                       
Query: 294 caacggttgtcttccagaata-aaatctgattgcctaagagaaggagcacaccatctctg 352
           ||| | ||||||||||  | | |||||||| ||||||| |||||||||| | ||||||  
Sbjct: 491 caaagtttgtcttcca--agacaaatctgagtgcctaaaagaaggagcaaagcatctcca 548

                                                                       
Query: 353 cttgctctaatgtctaaatgacattgcagattaagaaaaaacatggagc--ttccctaag 410
           ||||||| ||| |||||||| ||||||||||||||||||  | |  |||  ||||| |||
Sbjct: 549 cttgctccaatatctaaatgccattgcagattaagaaaatccct--agcagttccccaag 606

                                                                       
Query: 411 attctcagtcc-ggaagcatttggacaatccattactttcatagggtccaaaaatgtttg 469
           ||||||||||| ||| |||||||| ||||| |||||||||||||||||||||  ||||||
Sbjct: 607 attctcagtccagga-gcatttgggcaatctattactttcatagggtccaaacttgtttg 665

                                                                       
Query: 470 aattctacagaccaatgaattgtcccattagaagccaactttccagcaggtagcagcagc 529
           |||||| |||||||||| ||||| ||||||||||||||||  ||||||||||||||| ||
Sbjct: 666 aattctgcagaccaatgcattgttccattagaagccaactcaccagcaggtagcagctgc 725

                             
Query: 530 tccaactgttgtctccaa 547
           |||||||| |||||||||
Sbjct: 726 tccaactgctgtctccaa 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 944
Length adjustment: 10
Effective length of query: 538
Effective length of database: 934
Effective search space:   502492
Effective search space used:   502492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)