BAC Information

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BAC

Clone NameMSMg01-178A18
ChromosomeY (Build37)
Map Location 2,793,910 - 2,794,231
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178A18.T7 (MSMg01no178_a18.b1)MSMg01-178A18.TJ (MSMg01no178_a18.g1)
ACCAG372251AG372252
length738712
length of high quality
(start - end)		327 (47 - 373)570 (75 - 644)
definitionCHROMAT_FILE: MSMg01no178_a18.b1 PHD_FILE: MSMg01no178_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:44 2005CHROMAT_FILE: MSMg01no178_a18.g1 PHD_FILE: MSMg01no178_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTAAAAACAACCTGAAGACCAGTCTTCATTTTCCTTTACCTGG
TTTTGAAAGGCCAGATTTTCAAAATTTGCATATATAGGCCCCAAATTGAT
TCCAAATCCAGGGGCTCCTCTCAACCTCAGAAGAGCTGGTACTTCAGACA
TAATTCAGGGAAGGCTGTGTTTATGTATGTGTTGTTTTGGTATAGGAAGG
TAAGCTCTAACTCTATATCTCAGTATTATCTAAAAGCACATGTGCAGTTT
GGACTGGCCTTGAAAATGATGTATTCAGCCTTACAACTTTACTGGGGCCT
AAGGAAACATGTCTTCTATATCCTTTATATCTAAATTTTATTTTTTATTT
ATTGATTGTTTTATTGCACACACCACNAAGATTTTGTTGAAAGGACCCTG
ATAAAACTATCTCTTGTGAGACAAGGCCGGACTCCTACAAAATCCATATT
TAGATGCTTCGCGTCATACTAGTGCAGGCTTCACTAGGCCCCACAATGCT
GGCAGCTACATCAATGGAGTTTTTGGATTGCAGCCACACCCCGCCCCCTT
TGCGCGATGCATTTTTGTCCCATGTACTCTCCTTTTCCCCGCGTATAATT
TTTGCCAATTCCCTGAATATTTTAACAACCACCTCGCCCCTAACTCCGCC
CGTTACTTGGTTCCGTGATTTACTTTGCTGCGAGCTGN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGATACTTATAATATGAATGCTAGGA
TGACTGTACTTATGAAGAAATAATGAGCAGGTGAAACAGTCAGATGCAGA
TGTATGCAAACAACCAATGGACAGAATCTGCAGAACCATTGGTTTAATTT
GAGAAAGACTGAAGGAGGCTGACAGGACCAGTTGTCTCAAATACTATGGA
CCTAGAATTCTCCCAAATGCTAGACAACCAAACAGGCAGCATATATGAAC
TATCAGAAGGTCTCTAAAACATACACAGAAAAAAATCTGCTTGATCTCTA
TTCAATCAGAAATGATGTACCACATTCTCAACAAACTAGAGACATCAAGG
TGTTTAGAGATCTGGTACGATGGGGACTTGCCCTTGGAGACAGGGGATGG
GCAGTAGATATGGGATGTGGAACAGTAGGAAGGTGGACAATGAATGAACT
AATTAATAAAAAATAATAGTGCCACATAATCAGGTCCCCTATACTCTAAT
TCTGCAATCAGAATCCAAGAAAACTCACGTTCCCATAATAACATACTCAA
AGAAATTAAATATATATAACTGAAATGTCATGATTTTCAACCTTTATTTT
ACAAAGAAATTCACTGGAACCAAGATTTTCTATTGTTTGAACTCATTTAC
ATGCATTTGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_a18.b1 MSMg01no178_a18.b1 CHROMAT_FILE:
MSMg01no178_a18.b1 PHD_FILE: MSMg01no178_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:44 2005
         (327 letters)



>mm_chrY_2793707_2794433
          Length = 727

 Score =  507 bits (262), Expect = e-148
 Identities = 307/322 (95%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattaaaaacaacctgaagaccagtcttcattttcctttacctggttttgaaag 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaattcattaaaaacaaactgaagaccagtcttcattttcctttacctggttttgaaag 466

                                                                       
Query: 64  gccagattttcaaaatttgcatatataggccccaaattgattccaaatccaggggctcct 123
           ||||||||| |||||||||||||||||||| ||||| || ||| |||||||| |||||||
Sbjct: 465 gccagatttccaaaatttgcatatataggcgccaaagtgcttctaaatccagaggctcct 406

                                                                       
Query: 124 ctcaacctcagaagagctggtacttcagacataattcagggaaggctgtgtttatgtatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ctcaacctcagaagagctggtacttcagacataattcagggaaggctgtgtttatgtatg 346

                                                                       
Query: 184 tgttgttttggtataggaaggtaagctctaactctatatctcagtattatctaaaagcac 243
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||
Sbjct: 345 tgttgttttggtataggaaggtaagcactaactctatatctcagtattatctcaaagtac 286

                                                                       
Query: 244 atgtgcagtttggactggccttgaaaatgatgtattcagccttacaactttactggggcc 303
           |||| ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||
Sbjct: 285 atgtacagtttggactggccttgaaaatgaagtactcagccttacaaatttactggggcc 226

                                 
Query: 304 taaggaaacatgtcttctatat 325
           ||||||||||| ||||||||||
Sbjct: 225 taaggaaacatctcttctatat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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