BAC Information

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BAC

Clone NameMSMg01-183L05
ChromosomeY (Build37)
Map Location 1,311,307 - 1,311,904
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183L05.T7 (MSMg01no183_l05.b1)MSMg01-183L05.TJ (MSMg01no183_l05.g1)
ACCAG376210AG376211
length731736
length of high quality
(start - end)		540 (45 - 584)592 (76 - 667)
definitionCHROMAT_FILE: MSMg01no183_l05.b1 PHD_FILE: MSMg01no183_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:47 2005CHROMAT_FILE: MSMg01no183_l05.g1 PHD_FILE: MSMg01no183_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATATCCCATCAGACTCGGTCAAGGGGGGTGGTCCCCCATGTAGAA
TTTCATAAGGAGTAATGCCGAAACACCCAGGTGTGTTTCGGGCCCTAAGG
AGCACAAAGGGAAGGAGGGTCACCCAGTCTTTACCACTGGTCTCAAAAGC
TAATTTAGTTAGGGTTTCTTTCAGAGTCCTGTTCATTCCTTCTACCTATA
CTGATCTCTGGGGTTTATAAGCACAATATAACTTCCAATTGTTCCCCAAA
TGTGTGGCTAATTCCTGACTTACCTGGGCAACAAATGCAGGCCCATTATC
CAAGCATATTACCCTGGGGATCCCAAACTGGGGTAGGATCTCTTCAACGA
TCTTCTTGGTCACCACCTGAGCAGTTTCAGACTTGGTGGGGAAGGCTTCT
ACCCATCCTGAGAAAGTGTCTATGAAAACTAGTAACTATTTATTACCATA
TTTTCCTGGTTTGATCTCAGTGAAGTCTACTTCCCAGTAAACTCCAGGTC
TATCCCCCAGTTGTCATTTTCCTTGTTCATTAAAGGCGCGTGCAGCATTA
TTTAGGTGAAACACTTGCAGGATTTAGTTACTTGTTCGCCTAGTATCCTG
AGCACATAATAGTTTGAGGACTGGATTAATTCACACAATTTCTTTGCTCC
CAGATGCGCCAGGGGACGGCAGACATTTATC

GATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATCAAAATATATTGCATGAAGTTC
TCAAGGAATTAATTAATGTAGTTCTTAATACTGTACTGAACATATACAGA
CCACTTATATTTCAATTTCCTAAATAACATCTCCTTTTATAGCACTTACA
TTACATTAAGGGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGGAT
CAGGGGATATGGCCCAGAGGCAATGCCATGTGTGTTTTCAAACATTCACC
TACAACACCAGTGCTTAGGATTTTGGGAGGGGCAGAGACAGGAAGATGAC
TGTGGCTTCCTGAAAGCCAGCCTCACTACCAGCTCAGCAACAAACCCTGT
CATAAGGGGATAAATTAGGGAGTAAAGTAGCAGAACACACTACACCCTTC
CCTACCCTCTGAACTTACCTGTACAATTCTCTATGCAGACACACATAAAT
ATGATTAGAATATACAAGAGGTTACTTTGCATAGCTTATATGCAAATACA
ATGTTGTTTTAGGCTAGAGACCTGAGACTTTATATCATTAGGGTTCCAGA
AGCAAACACCCCAAATATAGAGAATAGATAAATCTTCTTACTCTGCAAAG
GAGACCTCAGTTAAGTGTGTGTGTCAGTGACACCAAAAGGTTTCCTCCTC
TATGCTCATTTATATAGCATAGAATGATCTGTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_l05.g1 MSMg01no183_l05.g1 CHROMAT_FILE:
MSMg01no183_l05.g1 PHD_FILE: MSMg01no183_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:47 2005
         (592 letters)



>mm_chrY_1311065_1312054
          Length = 990

 Score =  540 bits (279), Expect = e-157
 Identities = 523/609 (85%), Gaps = 28/609 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcaaaatatattgcatgaagttctcaaggaattaattaatgtagttc-tta-ata--- 55
           ||||||||||||||| |||| ||||||||||||||||| || || |||| ||| |||   
Sbjct: 840 catcaaaatatattgtatgatgttctcaaggaattaataaaagtggttctttatatacca 781

                                                                       
Query: 56  ---ctgtactgaacatatacagaccacttatatttcaatttcctaaataacatctccttt 112
              ||||||||||||||||||||||||||||||| | || |||||||||||| |||||| 
Sbjct: 780 catctgtactgaacatatacagaccacttatattgccatctcctaaataacaactccttg 721

                                                                       
Query: 113 tatagcacttacattacattaagggcaaaagtaatccagagattatttaaaataaagaag 172
           ||||||| || |||| ||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 720 tatagcagtttcattgcattaagggcaaaagtaatccagagatcatttaaaataaagaaa 661

                                                                       
Query: 173 gatcaggggatatggcccagaggcaatgccatgtgtgttttcaaacattcacctacaaca 232
           || | | ||| ||||||||| || |  |||| ||| ||  ||  ||||||||||||||||
Sbjct: 660 gacctgtggagatggcccaggggta--gccaagtgagtgatcccacattcacctacaaca 603

                                                                       
Query: 233 ccagtgcttaggattttgggaggggcagagacaggaagatgactgtggcttcctgaaagc 292
            ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 acagtgcttagga--tggggaggggcagagacaggaagatgactgtggcttcctgaaagc 545

                                                                       
Query: 293 cagcctcactacc-agctcagcaacaaaccctg-tcataagggga-taaattagggagta 349
           ||||| |||| || |||||||||| | ||| || ||| ||||| | ||||||||||||| 
Sbjct: 544 cagccccact-cctagctcagcaagagacc-tggtcacaaggg-agtaaattagggagtg 488

                                                                       
Query: 350 aagtagcagaacacactacacccttccctaccctctgaacttacctgtacaattctctat 409
           ||| |||||| ||||| | ||||||||||| ||||||||||||||||||||  ||| |||
Sbjct: 487 aaggagcagagcacacaatacccttccctagcctctgaacttacctgtacaggtctgtat 428

                                                                       
Query: 410 gcagacacacataaatatgattagaa-tatacaagaggttact-ttgcatagcttatatg 467
           ||| ||||||||||||||||||| || |||| ||||||||| | |||||||| |||||||
Sbjct: 427 gcatacacacataaatatgatta-aagtatataagaggtta-tgttgcatagattatatg 370

                                                                       
Query: 468 caaata-caatgttgttttaggctagagacctgag-acttt-atatcattagg-gttcca 523
           |||| | ||||||||| |||| |||| |||||||| ||||| ||||||||||| || || 
Sbjct: 369 caaa-agcaatgttgtcttagcctagggacctgaggacttttatatcattaggagt-cct 312

                                                                       
Query: 524 gaagcaaacaccccaaatatagagaatagataaatcttcttactctgcaaaggagacctc 583
           | ||||||| ||||| ||||||||||| | || | ||||||||| ||||||||| |||||
Sbjct: 311 ggagcaaactccccagatatagagaatgggtataccttcttactgtgcaaaggaaacctc 252

                    
Query: 584 agttaagtg 592
           |||||||||
Sbjct: 251 agttaagtg 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 990
Length adjustment: 10
Effective length of query: 582
Effective length of database: 980
Effective search space:   570360
Effective search space used:   570360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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