BAC Information

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BAC

Clone NameMSMg01-185D14
ChromosomeY (Build37)
Map Location 2,783,612 - 2,783,797
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185D14.T7 (MSMg01no185_d14.b1)MSMg01-185D14.TJ (MSMg01no185_d14.g1)
ACCAG377279AG377280
length716733
length of high quality
(start - end)
308 (68 - 375)233 (130 - 362)
definitionCHROMAT_FILE: MSMg01no185_d14.b1 PHD_FILE: MSMg01no185_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:52 2005CHROMAT_FILE: MSMg01no185_d14.g1 PHD_FILE: MSMg01no185_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GTTTTATTTTNNNNNNNCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCGCGGAATTCTTGTTTGCTTTTCTCTTGTTTCT
CCAATTACAGCACCAAGATTCTTCATTTCCTTTTGTTTTGGAAGATTCTC
AAGGAATCTTAAATCCAGACTTTAGGGCAGTTATTTAAAATTCACACCTG
GGGATTAATCTTCAGAAAATTATTTTTGGGAAAAACATGTGATTATTTCA
ACATCTATAGTAGTGTGGGGGCATTATTCTCCCTACGTCATGTACACTTA
AGATCTTTAGATACCTCCTTCCCTGTGATAGCCTTGCAGCTCACTGAGTG
ACATGTGCATTTGATGATAAATGATTTTTTTTTTCGCCGCACCCCACCAT
ATCCTGTCACCCATATCATGTTCAACATAGCAAGAACCACAAGTGAGTTG
AAAAATACGAATATATTTTTTAGTGTCTTGAAGCTATAATCCCCAAATTA
ATCAAAATATTATTTGGACTCTGTTACTTTATACCAGTGTTTTTTTTAAG
TGTACAAGTCGCAGGCCTTTTCTGTGACCCTTTGCACAGGTTTACAGTGT
CCTTTTACCATCTTCATCCTCCCCACTATCCTCCATTGCTATCAGATCTC
CCCCCTCCTGCTGCGCTTACTCTTCCAAAATACCTCCTATTTTTTAATGT
CCCTTATTAAATTTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTACTCAAAGTCATTGGAGACAACAG
CAAATCTGTTTTGTCCGATTTGACCATGGATGAGGATTTGTGCTCCATTA
AAAAGGTCAATAAATTGACTAATTTGATTCCTGCCTGTATATTTGTGTGT
GCTTTGTACTTTTTTCTGCTTTGTGTTTTGCTCTGTGTTCTTGATTATTA
CCTCTAGGGTCCTTACCATACTTGCAAAATGAAACATTTCTCAGTTGGAA
AAGCTCTCATTTTTTTCCTCTGTATTTTTATGATTCTTTAAAAAATAAGT
TTTTGATTCTTTTTGTCNTTTACCCCCACCCCAATTTCTGGGAAGACACT
TTTCATTGAAAATACAGCTTTTCATACAATAAATTCAGATTACTGTCCCC
CCAAATCCTTCTACAACCTCTCCACTTCTCGACCCACCCAAATTCACACT
TTTTCTTTCTCCCTTTATTAAAATACAAACAGACATCTAAATAATAATGA
TACTATTAATGATACTAATAACAATAATAATGAAGAATAAGATACAAAAT
AAACAAATGAACCAGAACAGAACAAAGCAAACATAATGAAAAAGAGGCTA
AGAAAAAGCACAAGAAATATACATGTATACACAGAGACATATATGTTCAC
AAACACTCAGAAATCCCATAAAAACAAATTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_d14.b1 MSMg01no185_d14.b1 CHROMAT_FILE:
MSMg01no185_d14.b1 PHD_FILE: MSMg01no185_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:52 2005
         (308 letters)



>mm_chrY_2783290_2783997
          Length = 708

 Score =  321 bits (166), Expect = 3e-92
 Identities = 181/186 (97%)
 Strand = Plus / Minus

                                                                       
Query: 123 attcacacctggggattaatcttcagaaaattatttttgggaaaaacatgtgattatttc 182
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 508 attcacacctggggattaatcttcagaaaattattttggggaaagacatgtgattatttc 449

                                                                       
Query: 183 aacatctatagtagtgtgggggcattattctccctacgtcatgtacacttaagatcttta 242
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 448 aacatctatagtagtgtggggccattattctccctacatcatgtacacttaagatcttta 389

                                                                       
Query: 243 gatacctccttccctgtgatagccttgcagctcactgagtgacatgtgcatttgatgata 302
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 388 gatacctccttccctgtgatagccttgcagctcactgaatgacatgtgcatttgatgata 329

                 
Query: 303 aatgat 308
           ||||||
Sbjct: 328 aatgat 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)