BAC Information

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BAC

Clone NameMSMg01-190A17
ChromosomeY (Build37)
Map Location 1,271,950 - 1,272,243
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190A17.T7 (MSMg01no190_a17.b1)MSMg01-190A17.TJ (MSMg01no190_a17.g1)
ACCAG380520AG380521
length758699
length of high quality
(start - end)
314 (56 - 369)275 (76 - 350)
definitionCHROMAT_FILE: MSMg01no190_a17.b1 PHD_FILE: MSMg01no190_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:10 2005CHROMAT_FILE: MSMg01no190_a17.g1 PHD_FILE: MSMg01no190_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTGGTCTTTCCATGACTTTTATCATGAATGGGTGT
TGGATTTCCTTAAATGATTTCTCAGCATCTAAGGAGATGATCATGTGGTT
TTTGTTTTTGAGTTTGCTTATATATAGTGGATTATGTTGATGTGTTTCCT
TATATTAAAGCATCCCTGCATCCCTGGGATGAAGCCTACTTGATCATTAT
TGATGATCTTTGTGATATGTTCTTGGATTCAGTTTGCATGGACTTTATTG
AATATTTTTTGCATCGGTATTCAGAAGGGAAATTGGTCTGAAGTCCTCTA
TTTTGTTGGGACTTTATATGTTTTGTTATTCACAGCATCCCCGCTTCTAT
AGAATGAATTGAATAGAGTACGTTCTGTTTCTAATTAGAAAAATAGTCTG
AGAACAGTTGGAATTAGTTCTTTTTTGAAGGTCTGATAGAACTCTACACT
AAACCCATGTGGGTGTTCCTGGGCATTATTTGGTTGGTAGAGTATTAGTG
ACTGCTTCTAATTCTTTACGTGATATGGGGCTGTTTAAACCTTTACTCTG
ATTTGTTATTTACCTTTCGTTACTCTGTTTTCTGTCTCTACTATTTCCCC
CCTTGTCCCCCCTTTTCCCCTTTCCTTTACTTTTTCTTTTTCTTTATTAC
CCATCGTACTGACCGTCTTCTTACCCCTTCCCCTTTTTTTTCCCTTATGC
CCCCCCCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAAACATACAGAGGCTGTGTACTG
CAAGCAGGTCTTCTGCAAAAGCAATATATAATATAAGTACTAAAATTGAT
ATCAGTGCTCTACAATATTCTATTCTATGTGATGAAATATCTCTCTCTCT
CTTTCTCTCTCTCTCTCAATATATATATTCCTCTAACACTTAGTATGAAT
AAAGATTCTCTTATATTCTCTCCTACAAAGGGGATGATATTGGCATGTCA
TCTGCAACATTCATTCACTTTCCTACACAGTTTGTGCTTTCTCTTAGCAA
TCTTCTAATATCCACCCCCCCCCCGCACTCAGATTACAAAGTAAGGTATC
TGAGCTCATGCAAACTGAAATTCTGAGTCAGAGTAGGGGGAGGACAATTC
CAAACTGTAGTTACATCCAAGAGCATGGACTTTAACAACTTGTGAATCAG
TAGAAGAAAAGACAATGTATAGACACGGTTGTTTCTTTTGGTTTGGTTTG
GTTTAGCTTTGCTTATTTCAGTTACCCACAATCATTATAAGAAACACAGA
GAAACACAGATTAATGCCTGTATCTTGAACTGAATGCAAACAGGGGCCTT
AGAACCAACATTTTATTTCTGTTACAATATACAATATATATTTTTAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_a17.g1 MSMg01no190_a17.g1 CHROMAT_FILE:
MSMg01no190_a17.g1 PHD_FILE: MSMg01no190_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:10 2005
         (275 letters)



>mm_chrY_1271772_1272446
          Length = 675

 Score =  234 bits (121), Expect = 4e-66
 Identities = 241/305 (79%), Gaps = 44/305 (14%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaacatacagaggctgtgtactgcaagcaggtcttctgcaaaagcaat-----atata 55
           |||||| | |||||||||  |||||||| |||||||||||||||||||||     |||||
Sbjct: 179 agaaacctgcagaggctgcctactgcaatcaggtcttctgcaaaagcaatacacgatata 238

                                                                       
Query: 56  atataagtactaaaattgatatcagtgctctacaatattctattctatgtgatgaaat-- 113
           | |||   ||| || ||  | ||||||||||||||     ||||||||||||||||||  
Sbjct: 239 a-ata---actgaattttctgtcagtgctctacaa-----tattctatgtgatgaaatct 289

                                                                       
Query: 114 --------atctctctctctct-----------------t-tctctctctctctcaatat 147
                   ||||||||||||||                 | |||||||||||||||  ||
Sbjct: 290 ctctctcaatctctctctctctctctctctctctctctctctctctctctctctca--at 347

                                                                       
Query: 148 atatattcctctaacacttagtatgaataaagattctcttatattctctcctacaaaggg 207
           || || || ||||||||||||||||||||| ||||||||||| |||||| ||||| ||||
Sbjct: 348 atctactcttctaacacttagtatgaataatgattctcttatcttctctgctacataggg 407

                                                                       
Query: 208 gatgatattggcatgtcatctgcaacattcattcactttcctacacagtttgtgctttct 267
            |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 408 catgatattggaatgtcatctgcaacattcattcactttcctactcagtttgtgctttct 467

                
Query: 268 cttag 272
           |||||
Sbjct: 468 cttag 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)