BAC Information

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BAC

Clone NameMSMg01-195P10
ChromosomeY (Build37)
Map Location 1,311,328 - 1,311,882
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195P10.T7 (MSMg01no195_p10.b1)MSMg01-195P10.TJ (MSMg01no195_p10.g1)
ACCAG384273AG384274
length768745
length of high quality
(start - end)
490 (52 - 541)579 (83 - 661)
definitionCHROMAT_FILE: MSMg01no195_p10.b1 PHD_FILE: MSMg01no195_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:20 2005CHROMAT_FILE: MSMg01no195_p10.g1 PHD_FILE: MSMg01no195_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTTCTAGCCTCTATGTGCACCACACATGCATGTTTATA
AACACAAACATGCAAAAACAAATTACTTAAATAAATAAAACAATTGAAAA
TTACAAACAACAGCACCTTCATCTGAAACAAAGTAGGAGAGTCTTGTTTG
GGGTCCGTTTTATTTTAGCTTTCAAGTTAGTATTGTAAACTTGGAAAATG
GAAAGCCTCTGGGTAGTAGTGGCAGCTAAAATACTACCTCCTTTTTGCTC
TTCAATGACAGACGACTGATTGAGCCTTTCTCACCCTTAGTACACATGTG
CAAACACTGCCAATCAGCAAGGGCCTTGGCTGAGATTGTTTTCCCGCTAT
CCAAACCCTGTTACCCAGTATGCTTTGTGGTAGTCATCAAGCCGAGTTCT
TGTGGAAGCATGGTAGGGAGAAGTCTCAGTAGAGGTAGTCAATTGTCTGT
TGAAAGATGATTAATACTGTTTGAGCTGGGGGCCTGTGTGGGGAAGAAGG
TGGAGGTGGTGTAGGTTCCCACTATATACCCTCTTTTTCTTCTTATTTCT
CTTCCCCCTTTTTACCCCCTATATTTCCACCCTTTCCTTCCCCCTAATTT
CCTACTTTTTCCGTCCCCCTTAACCCATATATTCCATTTATTAAATCCCC
TAACTTCCTCTTTATATTTCCTCCCATTAATCACAAGAATCATCCTTCTT
ATCATATAATTATCTCAC
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAAATTGTATG
AAGTTCTCAAGGAATTAATTAATGTAGTTCTTAATATACAATGTCTGTAC
TGAACATATACAGACCACTTATATTTCAATCTCCTAAATAGCAACTCATT
TTATAGCACTTACATTAAATTAAGTGCAAAAGTAATCCAGAGATTATTTA
AAATAAAGAAGGATCAGGGGATATGGCCCAGAGACAATGCCAGGAGTGTG
TTCAAACATTCACCTACAACACCAGTGCTTAAGATTTTGGGAGGGGCAGA
GACAGGAAGATGATTGTGGCTTCCTGAAAGCCAGGCTCACTACCAGCTCA
GCAAGAAACCCAGTCACAAGGGGATAAGTTATGTAGGAAAAGAGTAGATC
ACACTATACCCTTCCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGC
AGACTCACATAAATATGATTAAAATATGCAAGAGGCTATTTTGCATAGCT
TATGTTCAAAAGCAGTGTTGTTTTAGACTACAAACCTGAGGACTTTATAT
CATTATAGTTCCTGGAGCAAACTCCCAAGATATAGATGATGGGTATATCT
TCTTACTGTGCAAAGGAAACCTCAGTTAAGTGTGTGTGTCAGTGATTCCA
ACAGCTTTCCTCCTCTATGTTCCTTTATTTGCACACACTGATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_p10.g1 MSMg01no195_p10.g1 CHROMAT_FILE:
MSMg01no195_p10.g1 PHD_FILE: MSMg01no195_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:20 2005
         (579 letters)



>mm_chrY_1310905_1311882
          Length = 978

 Score =  456 bits (236), Expect = e-132
 Identities = 483/572 (84%), Gaps = 31/572 (5%)
 Strand = Plus / Minus

                                                                       
Query: 22  ttctcaaggaattaattaatgtagttcttaatata-ca-atgtctgtactgaacatatac 79
           |||||||||||||||| || || |||||| ||||| || |  ||||||||||||||||||
Sbjct: 978 ttctcaaggaattaataaaagtggttctttatataccaca--tctgtactgaacatatac 921

                                                                       
Query: 80  agaccacttatatttcaatctcctaaatagcaactcattttatagcacttacattaaatt 139
           |||||||||||||| | |||||||||||| |||||| || ||||||| || ||||  |||
Sbjct: 920 agaccacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcatt 861

                                                                       
Query: 140 aagtgcaaaagtaatccagagattatttaaaataaagaaggatcaggggatatggcccag 199
           ||| ||||||||||||||||||| ||||||||||||||| || | | ||| |||||||||
Sbjct: 860 aagggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggagatggcccag 801

                                                                       
Query: 200 ag--acaatgccaggagtgtgt--tcaaacattcacctacaacaccagtgcttaagattt 255
            |  |    ||||  |||| ||  ||  |||||||||||||||| ||||||||| |||  
Sbjct: 800 gggta----gcca--agtgagtgatcccacattcacctacaacaacagtgcttaggatg- 748

                                                                       
Query: 256 tgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggctcactacc-ag 314
            ||||||||||||||||||||||||| |||||||||||||||||||| | |||| || ||
Sbjct: 747 -gggaggggcagagacaggaagatgactgtggcttcctgaaagccagccccact-cctag 690

                                                                       
Query: 315 ctcagcaagaaacccagtcacaagggga-taagttatgtag-gaaaagagtagatcacac 372
           |||||||||| |||  |||||||||| | ||| ||| | || |||  ||| ||| |||||
Sbjct: 689 ctcagcaagagacctggtcacaaggg-agtaaattagggagtgaag-gagcagagcacac 632

                                                                       
Query: 373 tatacccttccctagcctctgaacttacctgtacagttctctatgcagactcacataaat 432
            ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||
Sbjct: 631 aatacccttccctagcctctgaacttacctgtacaggtctgtatgcatacacacataaat 572

                                                                       
Query: 433 atgattaaa--atatgcaagaggctattttgcatagcttatgttcaaaagcagtgttgtt 490
           |||||||||  ||||  |||||| ||| |||||||| |||| | |||||||| |||||| 
Sbjct: 571 atgattaaagtatat--aagaggttatgttgcatagattatatgcaaaagcaatgttgtc 514

                                                                       
Query: 491 ttagactacaaacctgaggacttt-atatcattat-agttcctggagcaaactcccaaga 548
           |||| |||   ||||||||||||| |||||||||  ||| |||||||||||||||| |||
Sbjct: 513 ttagcctagggacctgaggacttttatatcattaggagt-cctggagcaaactccccaga 455

                                           
Query: 549 tatagatga-tgggtatatcttcttactgtgc 579
           |||||| || |||||||| |||||||||||||
Sbjct: 454 tataga-gaatgggtataccttcttactgtgc 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space:   550792
Effective search space used:   550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)