Query= MSMg01no199_e24.b1 MSMg01no199_e24.b1 CHROMAT_FILE:
MSMg01no199_e24.b1 PHD_FILE: MSMg01no199_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:50 2005
(703 letters)
>mm_chrY_1655135_1656233
Length = 1099
Score = 491 bits (254), Expect = e-143
Identities = 593/710 (83%), Gaps = 36/710 (5%)
Strand = Plus / Plus
Query: 5 gaattctctgctgatctgcacaggaaagcacag-aaatctaggactatacagaaatatcc 63
|||||||||||||| ||||||||||| ||| || ||| |||||||||| |||||| || |
Sbjct: 205 gaattctctgctgaactgcacaggaaggcatagaaaaactaggactatccagaaaaatgc 264
Query: 64 agttccagagaagaaaaa-aaaaagaaacagg-gaggaattggaaag-tacaaataagaa 120
||| ||||| |||||||| | ||| ||| ||| |||||||||| ||| | |||||||
Sbjct: 265 agtcccagaaaagaaaaacagaaa-aaa-aggagaggaattggtaagcaaaaaataag-- 320
Query: 121 tttgaatgtacagattgtaaatcctgtctctgggagtaataatcaagata-ctttgaaag 179
||||||| | |||||||||||||||||||| || |||||||||||| | |||| ||||
Sbjct: 321 --tgaatgt-ctgattgtaaatcctgtctctgagaataataatcaagacaccttt-aaag 376
Query: 180 gaacaatcaagccatgtttaaaag-actggacacaccatttggcatatgttatataaatc 238
||||||| || ||||| |||||| ||| ||||||| || ||||| ||||||||||||||
Sbjct: 377 gaacaatgaaaccatgagtaaaagaactagacacacaatatggcaaatgttatataaatc 436
Query: 239 agtaaaaataattaaaaatgtctcattaaaattcacaacagtccccttaagttttttctt 298
|||| ||| |||||||||||| ||||||||| | | || | |||||||| ||||| ||||
Sbjct: 437 agtagaaacaattaaaaatgtgtcattaaaaatgaaaatattccccttatgttttctctt 496
Query: 299 ctggtttt-cttctttaaatatcttattgaatctgaagtgatggctcag-catttctgaa 356
||||||| ||| ||||||| |||||||||||||| || ||| | |||| | |||||| |
Sbjct: 497 gtggttttcctt-tttaaatgtcttattgaatctggagggattgatcagac-tttctgga 554
Query: 357 cactggcagctcatgcacagcatacacttggacttgccacat-ttccattggctgtttac 415
||| | |||| ||| ||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct: 555 caccgccagcacatacacagcatacacttggacttgccac-tcttccattggctctttac 613
Query: 416 aacttcttctattttagtaaccacagggaat-ccacactcccccttcccatgagacaatg 474
|||| | |||| || ||| ||||||||| || |||||||||| ||||||||| |||||||
Sbjct: 614 aactccgtctacttcagtgaccacaggg-atgccacactccctcttcccatgggacaatg 672
Query: 475 tatccatacctatacagagaattcaaaacaaacaaaatctcttcaatctgtctcaccaat 534
||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||
Sbjct: 673 tattcatacctatacagagaattcaaaacaaacaaaatgtcttcaaagtgtctcagcaat 732
Query: 535 catacattaggtccaatg-cttgggtgctttctgtttcaggctcacaatgatcaatggta 593
|| |||||||||||||| || | |||| || | ||||||||||| ||| ||||||
Sbjct: 733 tatgcattaggtccaatgtctcag-tgctctcagcttcaggctcac---gattaatggtt 788
Query: 594 tatacttt-ctaggttgtataacagcacttca-tttctctaca-ggaacctttcctcaga 650
|||| ||| ||| ||||||||| ||||| || ||| ||||| |||| ||| |||||||
Sbjct: 789 tata-tttgctaccttgtataactgcactacagttt-tctacctggaaacttgcctcaga 846
Query: 651 ttctgtcctcatcaagaatcccat-ctaataccatcagacacttctatgc 699
| ||||||||| |||| ||| || | || ||||||||| | ||||||||
Sbjct: 847 tcctgtcctcagcaaggatc--atgc-aacaccatcagaaaattctatgc 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1099
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1089
Effective search space: 754677
Effective search space used: 754677
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no199_e24.g1 MSMg01no199_e24.g1 CHROMAT_FILE:
MSMg01no199_e24.g1 PHD_FILE: MSMg01no199_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:50 2005
(617 letters)
>mm_chrY_2785644_2786656
Length = 1013
Score = 814 bits (421), Expect = 0.0
Identities = 534/599 (89%), Gaps = 50/599 (8%)
Strand = Plus / Plus
Query: 1 atcaca-taaaacagacagaagaagtagga-ataaagacatatttaggcaagatgaatag 58
|||||| ||||| || |||||||||||||| |||||| |||||| |||||||||| |||
Sbjct: 241 atcacattaaaaaaggcagaagaagtaggagttaaagaaatatttgggcaagatgagtag 300
Query: 59 tgaagtagagattagagcaagcagaaaggactgaggagatagctcactgcttaggcccac 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgaagtagagattagagcaagcagaaaggactgaggagatagctcactgcttaggcccac 360
Query: 119 tgattgcttttgcacaggaccagggttcaatttctaacacccacatggttgttcacaacc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgattgcttttgcacaggaccagggttcaatttctaacacccacatggttgttcacaacc 420
Query: 179 acctgcaattctagttctagacgatctgatgacctctttggacaacacacacacacacag 238
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 421 acctgcaattctagttctagacgatctgatgacctctttgcacaacacacacacacaca- 479
Query: 239 acacacacacacgcacacacacatatactcacccacagagaaaaaaaaatattttagaaa 298
|||| ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 480 -cacat---------cacacacatatactcacccacagagaaaaaaaaatcttt-agaaa 528
Query: 299 acaattatacaaacaaaaaggagtcaagtatagttttattcccctttaataccagcactc 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 529 acaattatactaacaaaaaggagtcaagtatagttttattcccctttaataccagcattc 588
Query: 359 agaagcaggctaaactctgtaagttgaatgactgcctagctaataggtgtgttttcagaa 418
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 agaagcaggctaatctctgtaagttgaatgactgcctagctgataggtgtgttttcagaa 648
Query: 419 ttttatttttctcttctttttctttttttttctttttctttttttttttttttgtatttt 478
|||||||||||| ||||||||||||| |||||
Sbjct: 649 ttttatttttct-----------------------------ttttttttttttg-atttt 678
Query: 479 aggactatttcagtatttgtttaaagattctagatttttttttcttctgatttacttttt 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 679 aggactatttcagtatttgtttaaagattctagattttttttt-----gatttacttttt 733
Query: 539 ctaatgttttaggctttttt-cgggctttttagtattttacagttttcaggtttttttt 596
|||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||
Sbjct: 734 ctaatgttttaggctttttttcggggtttttattattttacagttttcaggtttttttt 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1013
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1003
Effective search space: 608821
Effective search space used: 608821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
