BAC Information

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BAC

Clone NameMSMg01-205J14
ChromosomeY (Build37)
Map Location 2,783,605 - 2,783,797
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205J14.T7 (MSMg01no205_j14.b1)MSMg01-205J14.TJ (MSMg01no205_j14.g1)
ACCAG389526AG389527
length746753
length of high quality
(start - end)
288 (74 - 361)344 (76 - 419)
definitionCHROMAT_FILE: MSMg01no205_j14.b1 PHD_FILE: MSMg01no205_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:30 2005CHROMAT_FILE: MSMg01no205_j14.g1 PHD_FILE: MSMg01no205_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTTTTCTCTTCAACATGTTTCTCCAATTACAGCACCAAGATTC
TTCATTTCCTTTTGTTTTGGAACCCTCTCAAGGAATCTTAAATCCAGACT
TTAGGGCAGTTATTTAAAATTCACACCTGGGGATTAATCTTCAGAAAATT
ATTTTTGGGAAAAACATGTGATTATTTCAACATCTATAGTAGTGTGGGGG
CATTATTCTCCCTACGTCATGTACACTTAAGATCTTTAGATACCTCCTTC
CCTGTGATAGCCTTGCAGCTCACTGAGTGACATGTGCATTTGATGATAAA
TGATACACAAATTTTGTAGCACCTTACCATATCCTGTCACCCATATCATG
TTCAACATAGCAAGACCCCCCCGCGAGATGAAAAATACAAATATATTTTT
TAGTGTCTTGAAGCTATAATCCCCAAATTAATCAAAATATTATTTGGACT
CTGTTACTTTATACCAGTGTTTTTTTTTAAGTGTACAAGTCGCAGGCCTT
TTCTGTGACCCTTTGTACAGGTTTACAGTGCCCTTTTACCATCTTCATCC
TCCCCACTATCCTCCATTGCTATCAGATCTCCCCCCTCCTGCTGCGCTTA
CTCTTCCAAAATACCTCCTATTTTTTAATGTCCCTTATTAAATTTATATT
TTTACAATAGTCATTTTGAGTTCTACTTGTCTAACCTATTATATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATATTTTGAATATTAGCCTT
CGATCAGATGTAGGGTTAGTAAAGAACTTTTCTCCATTACTAGGTTGCCA
TTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAACCTTTTCAGTTTCA
GAAGGTCCCATTTGTTAATTGACCAAGATATGCTTTCAGACATGAACATG
GCATGACTGTCCTAAAAGAGGCTATGCCATCAACTGACTGAGACAGATGC
AGATATTTACAGCCAATCATTGGTCTAAACCCAGGAACCCCTATGGAAGA
GTTTGATCAAAGACTGATGGAACTGAAGGGAATTACAACCCTATTGGAAG
AAAAACACCATGAAAACCCCCCCCTTCTCAGAATTCTCAGGTACTAAGCC
ACCAACCAAAAAGCATACATGTACTAGTACATAACCCCTACTATACATAT
GTAGCAGAGGATTGCATTGCCTGGCCTCATTGCGATGAGGGTGTGTGCTT
GTCCTGCGGAAGCTTTATGTCCCCAGAATAGTCGAATTCTATATAGGTGC
TCGCTCACACCTATTTTTTTTCCCACCGCCCTTACCCTTTTCCCCCCCTT
TCCTTTTTTCCCCCTCCCCCCTTTTCCCCCCTTTACTTTTTCTCCCCTTC
CCTTTTTCTTTTCCCTTTTTCTTTTCCCCCTTCCCCTTTTCTTTTTTCCC
CTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_j14.b1 MSMg01no205_j14.b1 CHROMAT_FILE:
MSMg01no205_j14.b1 PHD_FILE: MSMg01no205_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:30 2005
         (288 letters)



>mm_chrY_2783310_2783997
          Length = 688

 Score =  335 bits (173), Expect = 2e-96
 Identities = 188/193 (97%)
 Strand = Plus / Minus

                                                                       
Query: 96  attcacacctggggattaatcttcagaaaattatttttgggaaaaacatgtgattatttc 155
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 488 attcacacctggggattaatcttcagaaaattattttggggaaagacatgtgattatttc 429

                                                                       
Query: 156 aacatctatagtagtgtgggggcattattctccctacgtcatgtacacttaagatcttta 215
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 428 aacatctatagtagtgtggggccattattctccctacatcatgtacacttaagatcttta 369

                                                                       
Query: 216 gatacctccttccctgtgatagccttgcagctcactgagtgacatgtgcatttgatgata 275
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 368 gatacctccttccctgtgatagccttgcagctcactgaatgacatgtgcatttgatgata 309

                        
Query: 276 aatgatacacaaa 288
           |||||||||||||
Sbjct: 308 aatgatacacaaa 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)