BAC Information

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BAC

Clone NameMSMg01-212I05
ChromosomeY (Build37)
Map Location 1,260,930 - 1,261,397
singlet/doubletsinglet
Overlap genenone
Upstream geneJarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212I05.T7 (MSMg01no212_i05.b1)MSMg01-212I05.TJ (MSMg01no212_i05.g1)
ACCAG393841AG393842
length713956
length of high quality
(start - end)
536 (42 - 577)---
definitionCHROMAT_FILE: MSMg01no212_i05.b1 PHD_FILE: MSMg01no212_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:18 2005CHROMAT_FILE: MSMg01no212_i05.g1 PHD_FILE: MSMg01no212_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATATCTTCCCGTTAATAATCAGCTTTAATGCCAGCACCATGCAATATGA
CAAGTCATGTCTCTGTCCTCCCCTGAACTCTCAAGCTCATGCCCTACTCC
CACCCATATAAATAATGATAATAAATCATAAAATGAGAGACAAGTTTCAT
TAGGTTTCATTATTCAAATGAAACCTGATTTTGTCTGATTTCTGAGTCTC
TTTGGATCAGTTTTCTGGGTTGCACTTTGTGTAACAAGGCCACATTCCTT
TTATCTATCACTCTTTCCCCAACTTGTTGTTTCTCCCTCAGACTTCATAC
CAGAGATTCTATCTATGTCCTGTCTTTCTCCCTTACTTCCTATACATCCA
TCTTTTGCCCCCATCCCTGCTCCTCTAAGTCATATCTCCAATTCCTTGCT
CACTATGCAGACCATAACAGCTACGTCCTGTCCATTTTAGCCTGTGTGAT
ATTAGATGTATGCACTGTTCATAGCCTGACTTGCAACTTTCATCTTCCTT
TGATGTTCTTTCCACCATAGTCCATCTCTTTCAACAAAGTGTTAACTAAA
AGCATGTCATGTCACACGTATTATTTTTGAGAATTACACATATTTTATTA
ACCAAGATACCGAGGTTATCATAGACCCCTACGTACACTACACAGGAACA
ATTTTTTTTCTCA
TTCTCCTCCCTTTTTCTTTCTCTTTCCACCCCTCTCACTCTCTCTCTCTT
CTTCCCTCCCTNTCTTTTTTTCTTTTTTTTTTTCTCTCTCCTCTTTCTTC
TTTTCTTCTTTCTTCTCTTTCCCATCTCCTCTCCTTTTATTCTTTTCTCT
CTCTTCTTTTCTTTCTCTTTTCATTCTTCTCTTCTTTTCTCTCTCTCCCT
CTCTTATTCTTCTTTTTTTCTCTTTTTTCCCCGCCTCCAAATTTCTACTT
AAGTGGGTGTTTAAGTGTCCCCCTTGCGCCGGTGNCCCGTCCCCCTTGTT
GTTCCCCTATCCCGTTTAACTATTTTTTTTATAGGGTTTTTGTAACCCAC
CCTTTCTATTCAAGAAAATACGGCGTATTCCCCGCCCGCAAAATTTCCCC
CACGGATACTAAAAACAAAATTTGGNNNTAAATTGTAAGTTGGCGGTTTA
GGGGGGNAATTCCGGTGTTCCTGTCTTTCTCCTAAAAGCGCAAGGGCGCC
AATAATATCCTTTTTTTTCTCTCTTTCTTCTCTTTCTCTGCACTCTTTTT
TCTTTACTCTTTTCTCTCCTCTCTTCGCGTGTCTGTTTTGTTTCTCTCCT
TCCTCTCGTCTTTTCTTATACACCGGGCAGCCACCTCCCCCCCCCTTTTT
TTTTTTCGNGGGGGGGGGAGGAAATTATTATTATTCTTTTTTTTTCTACC
CTTCTTCTCTTTCCTTTCTTAACACTCCTTCTTTCACTTTTTTTTTCTCA
CATTTTATATTTTTTCTTCTTCCCCTTCTATTATTTTTTTTTCTTCTNCC
CCCCTCCGCTTTTCTTCTCTCCTTTTCTCTATCTCCCCTCACTTATGTGT
CTATCCTTACCATCCCCTCTTCTTACTTTTTATTTCTCCTCCCCTCTCCT
ATTTTCTTCCCTTTCCTTACTACCCTCCTTTTTCTCTCCTCTCTCTTTCC
TCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_i05.b1 MSMg01no212_i05.b1 CHROMAT_FILE:
MSMg01no212_i05.b1 PHD_FILE: MSMg01no212_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:18 2005
         (536 letters)



>mm_chrY_1260674_1261604
          Length = 931

 Score =  412 bits (213), Expect = e-119
 Identities = 412/483 (85%), Gaps = 25/483 (5%)
 Strand = Plus / Minus

                                                                       
Query: 57  tgacaagtcatgtctctgtcctcccctgaactctcaagctcatgccctactcccacccat 116
           |||||| |||||| |||||  || |||| |||| ||||| |||||||||| |||||||| 
Sbjct: 724 tgacaactcatgtttctgtggtcacctgtactcacaagcacatgccctacccccacccac 665

                                                                       
Query: 117 ataaat--aatgataataaatcataaaatgagagacaagtttcattaggtttcattattc 174
           |||| |  ||  |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 664 ataagtcaaa--ataataaatcttaaaaagagagacaagtttcattaggtttcattattc 607

                                                                       
Query: 175 aaatgaaacctgattttgtctgatttctgagtctctttggatcagttttctgggttgcac 234
           ||||| |||||| |||| |||||||||||||||| |||||||||||||| |||||| |||
Sbjct: 606 aaatggaacctgtttttctctgatttctgagtctgtttggatcagttttttgggtttcac 547

                                                                       
Query: 235 tttgtgtaa--caaggccacattccttttatctatcactctttccccaacttgt-tgttt 291
            |||||  |  ||||||||||||| |||||||| ||||||    |||||||| | |||||
Sbjct: 546 attgtg--attcaaggccacattctttttatctgtcactc----cccaactt-tatgttt 494

                                                                       
Query: 292 ctccctcagacttcataccagagattctatct-atgtcctgtctttctcccttacttcct 350
           |||||||||| |||||||||||||||||| || ||||| |||| ||||||||||||||||
Sbjct: 493 ctccctcaga-ttcataccagagattcta-cttatgtcttgtccttctcccttacttcct 436

                                                                       
Query: 351 atacatccatcttttgcccccatccctgctcctctaagtcat-atctccaattcc-ttgc 408
           | |||||||||||||||  ||||||||| ||||| ||||| | ||||||||| || || |
Sbjct: 435 aaacatccatcttttgctgccatccctggtcctccaagtc-tcatctccaatgccatt-c 378

                                                                       
Query: 409 tcactatgcagaccata-acagctacgtcctgtccattttagcctgtgtgatattagatg 467
           || | ||||||| || | | ||||| |||||||  | |||||| ||||||||||||||||
Sbjct: 377 tctccatgcagatcagaga-agctaagtcctgtttagtttagcatgtgtgatattagatg 319

                                                                       
Query: 468 tatgcactgttcatagcctgacttgcaa-ctttcatcttcctttgatgttctttccacca 526
           |||  |||||||| |  |||| ||| || |||||||||||||||||||||| ||||||||
Sbjct: 318 tatatactgttcacaatctgaattg-aagctttcatcttcctttgatgttccttccacca 260

              
Query: 527 tag 529
           |||
Sbjct: 259 tag 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 931
Length adjustment: 10
Effective length of query: 526
Effective length of database: 921
Effective search space:   484446
Effective search space used:   484446
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)