BAC Information

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BAC

Clone NameMSMg01-216O07
ChromosomeY (Build37)
Map Location 2,432,846 - 2,433,447
singlet/doubletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216O07.T7 (MSMg01no216_o07.b1)MSMg01-216O07.TJ (MSMg01no216_o07.g1)
ACCAG396606AG396607
length719720
length of high quality
(start - end)
674 (46 - 719)470 (125 - 594)
definitionCHROMAT_FILE: MSMg01no216_o07.b1 PHD_FILE: MSMg01no216_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:06 2005CHROMAT_FILE: MSMg01no216_o07.g1 PHD_FILE: MSMg01no216_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTATTTGAAACAAAGTGATAGGATCCATCTATCTCTTCAAGGAT
ATCTCCGTTTTGTTCAAAAAGAACAAAAATGCAATGCAAGTTCAGGATAT
TGATCACCTATCCATGCATCTTAAACCCATAGGTTCTAGCCAGAATGTAA
GGACAGAAGTCTAAACTTCACCTATACTACAACTAACTCTGAAGATATCT
AGCAATCTCCAGTTCCTTTCTGGTACTTACCCACACCAAGTCTGCATTCA
GGAATATAGTCTAGTGTGAGATAGTGCCAGCAGTTAATTGCAAAATCCCA
CTCTGAGTTGAGTTGTATGTAAACTCAGACATCTGTAATATAGACACACA
TGCATATTCACAAATACTCACAGAAAGAGGCAAGAAGTAGAGGAGCTGAA
TCTTAGAAATCCTCAAGGAAGAGAATGAAAATCTTGTAAGGCACAGAGGT
AAGAGAAAAACTGTGTCTTTCTGCACAAAATCAGGCCATTCTGTCTTCCA
TCACTGAACGGGAAGGCTCACTATCACTTATCACTATCTGATAAGGTATA
GACAGTTGATGAAGGATGAATAGTCAGTTTTCATCAAAGGTATTGACTTT
GAAGGTGATAGATTGTTCATTCTCTACTGGAAGCCAGATGTCCAAGAGTT
TATGGGAAACACAAATGAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTGGCTGAGGTACTTAAAGATCCAACT
GAAAGCTATTAACAGGATGACACCTTTTTTAGGAAGATGTACCCACATGT
GGCTTGAGATTGATGTATTGGATGGTACCCTGCAGTTCTCAGAATCTGGA
CATCTTTTCCCTATAAGCTGCAGGATCCCCAATATGGTGTTGAATGATAA
GGATACAGAGATATAAACTTGTTAGCCACCACACTGTGAGGTGGGAGAGG
GTGCACAGGTGAAGGAACACCCTCATTGAAGCAGGGGGACAGAGGATGTG
ATAGGGGGTTTCTGGATGAGTGGGAAACTGGGAAAGAATACAACATTTGA
AATGTAAGTTAAAATATATGCAACCAAAAAAAAAAGACCAACCAAATAAT
GCAAAGTGAGGGGCCCATCGCTGCCACCGAATATGTAGCAAATGATGGAC
TAGATGGACACAGTGAGAGGAGGGGATCCTGGTCCTGAGAGACTCTATAC
CTCAGTGTAAGGGAATGGCAGGACAGGGAAGCAGGAGTGCTTAGGTTGGT
CAGTAGGAGGAGGAGGGACATTGTTATTGCGTTTTTAGAGGCCACAACTT
GTAATGCGTTAACATTACACATGTCATTGTCTGATATTTCTACTATATTT
TATTTTTACTTTTTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_o07.b1 MSMg01no216_o07.b1 CHROMAT_FILE:
MSMg01no216_o07.b1 PHD_FILE: MSMg01no216_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:06 2005
         (674 letters)



>mm_chrY_2432580_2433658
          Length = 1079

 Score =  418 bits (216), Expect = e-121
 Identities = 511/624 (81%), Gaps = 40/624 (6%)
 Strand = Plus / Plus

                                                                       
Query: 67  gttcaaaaagaacaaaaatgcaatgcaag-ttcaggatattgatcacctatccatgcatc 125
           |||||| ||||| |||||| |||||| || |||||||| |||||| || |||| ||||||
Sbjct: 267 gttcaagaagaagaaaaattcaatgc-agtttcaggatcttgatc-cccatccctgcatc 324

                                                                       
Query: 126 ttaaacccataggttctagccagaatgtaaggacagaagtctaaacttcacctatactac 185
           |||| |||||||| |  || ||||| || ||| |||||||||||||||||||||||||||
Sbjct: 325 ttaatcccatagggtggagtcagaaggttaggtcagaagtctaaacttcacctatactac 384

                                                                       
Query: 186 aactaactctgaagatatctagcaatctccagttcctttctggtacttacccacaccaag 245
           ||| |||| ||||||| |||||| |||||| ||| || |||||||||||  |||||||||
Sbjct: 385 aaccaactgtgaagatttctagccatctcctgtttctgtctggtacttagtcacaccaag 444

                                                                       
Query: 246 tctgcattcaggaata-t---agtctagtgtgagatagtgccagcagttaattgcaaaat 301
           ||||| || ||| ||| |   |||||||||||||||||||||||||| | ||||||||| 
Sbjct: 445 tctgccttaaggcatactgcaagtctagtgtgagatagtgccagcagatgattgcaaaaa 504

                                                                       
Query: 302 cccactctgagttgagttgtatgtaaactcagacatctgtaatatagacacacatg--ca 359
           |||||| || ||||| ||||| ||||| | |||||||| ||||||||||||||| |  ||
Sbjct: 505 cccactatgtgttgacttgtacgtaaaatgagacatctataatatagacacacacgtaca 564

                                                                       
Query: 360 tattcacaaatactcacagaaagaggcaagaagtagaggagctgaatcttagaaatcctc 419
           ||  |||| ||||||||||||||||| ||||||| ||| |||||| |||||| || ||||
Sbjct: 565 ta--cacacatactcacagaaagaggtaagaagtggagaagctgagtcttaggaaccctc 622

                                                                       
Query: 420 aaggaagagaatga----aaatcttgtaaggcacagaggtaagagaaaaactgtgtcttt 475
           ||||||||||  ||    ||||||||||||||||||||||          |||||||| |
Sbjct: 623 aaggaagaga--gagtagaaatcttgtaaggcacagaggt----------ctgtgtctat 670

                                                                       
Query: 476 ctgcacaaaatcaggccattctgtcttccatcactgaac-gggaaggc-tcactatcact 533
           |||||||||||| ||  |||||| ||||||| | || |  |||| ||| |||||||| ||
Sbjct: 671 ctgcacaaaatcgggttattctggcttccatta-tggagtgggagggcctcactatccct 729

                                                                       
Query: 534 tatca--ct-atctgataaggtatagacagttgatgaaggatgaatagtcagttttcatc 590
              ||  || |||||| || |||| |||||||| ||  ||| | | ||||||||||||||
Sbjct: 730 ---cattcttatctgagaaagtatggacagttgttgggggagggagagtcagttttcatc 786

                                                                       
Query: 591 aaaggtattgactttgaaggtgatagattgttcattctctactggaagc--cagatgtcc 648
           |||||||| | ||||||| ||||||| |||| ||| ||||| ||| |||  ||  |||||
Sbjct: 787 aaaggtatggcctttgaaagtgataggttgtccatgctctagtggtagctcca--tgtcc 844

                                   
Query: 649 aagagtttatgggaaacacaaatg 672
           ||||||||||||| | ||||||||
Sbjct: 845 aagagtttatgggcagcacaaatg 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1079
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1069
Effective search space:   709816
Effective search space used:   709816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)