Query= MSMg01no217_c20.b1 MSMg01no217_c20.b1 CHROMAT_FILE:
MSMg01no217_c20.b1 PHD_FILE: MSMg01no217_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:33 2005
(417 letters)
>mm_chrY_1588416_1589232
Length = 817
Score = 298 bits (154), Expect = 5e-85
Identities = 347/416 (83%), Gaps = 17/416 (4%)
Strand = Plus / Plus
Query: 4 tccgcggaattcactattgtattttagtacatttcaatatcatatgaagtaccacaaaaa 63
||||| ||||||| || ||||||||| || |||||||||||||| |||||| || ||||
Sbjct: 203 tccgctgaattcattactgtattttaatagatttcaatatcataagaagtagca-gaaaa 261
Query: 64 tgagtgaaaaat-gacag--tggtg-agacgcccttagaattattaaattacacacttaa 119
|||| | ||||| || || |||| | | | ||||||| |||| |||||||||||||
Sbjct: 262 tgag-ggaaaatgga-aggaaggtgaaaatgtgtttagaatcattacattacacacttaa 319
Query: 120 aaataaataaatcaatggatttatatagtacataaataaaactccaataaaacttctgaa 179
||||||||| ||||||||||| | ||||| ||||| | ||| ||||||| || |||||
Sbjct: 320 aaataaatatgtcaatggatttctttagtatgtaaattatacttcaataaagctgctgaa 379
Query: 180 aaggctt----aactaaatgtgatgcttctcatgtgagttgttatttgtcatagcacctg 235
||||||| ||| |||||| |||||| ||||||||| ||| |||||||||| |||
Sbjct: 380 aaggcttggccaac----tgtgatacttctcgtgtgagttggtatgtgtcatagcatctg 435
Query: 236 tgatttagctgttaatagtagtgggttttattacttatgaatcagacaccaatacatcca 295
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct: 436 tgatgtagctgttaatagtagtgggttttattacagatgaatcagacaccaatataacca 495
Query: 296 tgaaggggtaacactcca-ttccctcaggagaaataaatcaattaaaagtcattggatta 354
||||||| ||||||||| ||||||||||||||| |||| || ||||| ||||||||||
Sbjct: 496 tgaagggataacactccccttccctcaggagaaagaaatgaagtaaaattcattggattt 555
Query: 355 attgatgagaattttttctggttaaagctgacttggcaggaagttggacagattgg 410
|||||||| |||||| ||||| | |||||| ||||||||||||| || |||||||
Sbjct: 556 cttgatgaggattttt-ctggtcatagctgagttggcaggaagttagatagattgg 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no217_c20.g1 MSMg01no217_c20.g1 CHROMAT_FILE:
MSMg01no217_c20.g1 PHD_FILE: MSMg01no217_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:33 2005
(229 letters)
>mm_chrY_2783369_2783997
Length = 629
Score = 294 bits (152), Expect = 3e-84
Identities = 170/176 (96%)
Strand = Plus / Minus
Query: 54 attcacacctggggattaatcttcagaaaattatttttgggaaaaacatgtgattatttc 113
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 429 attcacacctggggattaatcttcagaaaattattttggggaaagacatgtgattatttc 370
Query: 114 aacatctatagtagtgtgggggcattattctccctacgtcatgtacacttaatatcttta 173
||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct: 369 aacatctatagtagtgtggggccattattctccctacatcatgtacacttaagatcttta 310
Query: 174 gatacctccttccctgtgatagccttgcagctcactgagtgacatgtgcatttgat 229
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 309 gatacctccttccctgtgatagccttgcagctcactgaatgacatgtgcatttgat 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
