BAC Information

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BAC

Clone NameMSMg01-233H05
ChromosomeY (Build37)
Map Location 2,783,621 - 2,783,797
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233H05.T7 (MSMg01no233_h05.b1)MSMg01-233H05.TJ (MSMg01no233_h05.g1)
ACCAG399652AG399653
length740742
length of high quality
(start - end)
320 (45 - 364)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no233_h05.b1 PHD_FILE: MSMg01no233_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:09 2005CHROMAT_FILE: MSMg01no233_h05.g1 PHD_FILE: MSMg01no233_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCAGGTTACAACAGACTATTCATAGAAGGGACTGCAGATATCGTG
GTGAATTGTGGAGAGCCGGTATGTGCTGCAAGCAATTACGTGCGTGCCGC
CAGTAATCTCTGAGAAGAGCCATGTGTGCCGTGAGCAATCACCATTATAA
GATGGTGCGGGCCTCCACAGTGCCTAACTAGTAAACAAGCCTTGTACGCA
GGTGCGAGAGTGAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATA
GTGGGGTGATGGGCAAGCAATGAATCAGGAGCTGTCATGCCATATCAGGT
GCTGAAATGTCATTTTGTTGGCTACCCCCCCACCCGCCATTTTCCCGGAT
CGGGATCTTCCTGAGAAGCCCCCAATAAAGCTCTTGCTGAGGAAGATTCT
GGTTTGTTGCATCTTTCTTGCTGGTCGAGCTGGACGCAATAAGTGGTGCC
AAAACCCGGGAACTGTCTTCACACCTGCGCAAGGAAGATCCCTCATTCAC
GGGGCAGAATCAGAACTGTGGGACAAAAGGCTCTACAAGATACGTACAAT
CTTGAAATTTCTCCAGAGTTAGAAGCCCTTTTGATTGTTTGCATGGCGAT
TACACTTTTCCTTTTGGTTTCGTTTTGTTTCCACACTGGAACTGTTGACT
GGTTCTTAGTCGCAGTCCGGCCTGTACAGTGCCTGAACAG
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTTTGCTTTTCTCTTGTTTCTCCA
ATTACAGCACCAAGATTCTTCATTTCCTTTTGTTTTGGAAGATTCTCAAG
GAATCTTAAATCCAGACTTTAGGGCAGTTATTTAAAATTCACACCTGGGG
ATTAATCTTCAGAAAATTATTTTTGGGAAAAACATGTGATTATTTCAACA
TCTATAGTAGTGTGGGGGCATTATTCTCCCTACGTCATGTACACTTAAGA
TCTTTAGATACCTCCTTCCCTGTGATAGCCTTGCAGCTCACTGAGTGACA
TGTGCATTTGATGTTTTTTGATCCACCCCCTTTGAAGCACCTTACCATAT
CCTGTCACCCATATCACGCCCATCATAGAAAGAACCACAAGTGAGTTGAA
AAATACAAATATATTTTTTAGTGTCTTGAAGCTATAATCCCCAAATTAAT
CAAAATATTATTTGGACTCTGTTACTTTATACCAGTGTTTTTTTTAAGTG
TACAAGTCGCAGGCCTTTTCTGTGACCCTTTGCACAGGTTTACAGTGTCC
TTTTACCATCTTCATCCTCCCCACTATCCTCCATTGCTATCAGATCTCCC
CCCTCCTGCTGCGCTTACTCTTCCAAAATACCTCCTATTTTTTAATGTCC
CTTATTAAATTTATATTTTTACAATAGTCATTTTGAGTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_h05.g1 MSMg01no233_h05.g1 CHROMAT_FILE:
MSMg01no233_h05.g1 PHD_FILE: MSMg01no233_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:09 2005
         (289 letters)



>mm_chrY_2783309_2783997
          Length = 689

 Score =  304 bits (157), Expect = 5e-87
 Identities = 172/177 (97%)
 Strand = Plus / Minus

                                                                       
Query: 113 attcacacctggggattaatcttcagaaaattatttttgggaaaaacatgtgattatttc 172
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 489 attcacacctggggattaatcttcagaaaattattttggggaaagacatgtgattatttc 430

                                                                       
Query: 173 aacatctatagtagtgtgggggcattattctccctacgtcatgtacacttaagatcttta 232
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 429 aacatctatagtagtgtggggccattattctccctacatcatgtacacttaagatcttta 370

                                                                    
Query: 233 gatacctccttccctgtgatagccttgcagctcactgagtgacatgtgcatttgatg 289
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 369 gatacctccttccctgtgatagccttgcagctcactgaatgacatgtgcatttgatg 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)