BAC Information

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BAC

Clone NameMSMg01-234F15
ChromosomeY (Build37)
Map Location 1,593,195 - 1,593,468
singlet/doubletsinglet
Overlap geneLOC667137
Upstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234F15.T7 (MSMg01no234_f15.b1)MSMg01-234F15.TJ (MSMg01no234_f15.g1)
ACCAG400273AG400274
length1,612740
length of high quality
(start - end)
---257 (434 - 690)
definitionCHROMAT_FILE: MSMg01no234_f15.b1 PHD_FILE: MSMg01no234_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:19 2005CHROMAT_FILE: MSMg01no234_f15.g1 PHD_FILE: MSMg01no234_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTTTTTTTTTTNNTTTTTNNTTTTTNNNTAATAGTNNTAAAGAGNNAGA
AGAAGAANAGAAAAAGAGAGAAATCATAAAATAACTTGCGTGCCCCGGCT
GAACTACGCACTCCACTCCATTCTCTGCTACGAGCGTATCTCCGGCGAGA
TACGAGCGAGATGATATGCGGATACGAGAGAAGACTAAGGACGAAGGGCG
AAGCAGGCCCACACCCACGCTATTTAGTATTAGTTTGTANACATCTGTCA
TACTGTCACTGTATGAGATACAATCAACACGAAAAGTCGGTTTAATATCT
CATTTATATCTCTACTCCTATTTCCATGTAAGTCTCCCACCGTCTCTCCC
TTCCACCACCACACCTCTCATATATCATATATCCTCTCTCTTTTACTATC
CGCAACACCGCTNTCCGTCGCCACATGTGATTGGCGTCGGAGGCGAGACG
TGGCGTGGCGGAACGCCGGCGTACGAAGAAAAGCTAACGTAGTATGGATG
ACAAATAGAGACATGGAANATCTACATCTGCTTTGAGCTTAATATATACC
ATCATGTTTGATAATCTATTAATCATATCTTTACTACTACATATACATAC
ACAATCAATCCAACACATGAGAATACAATAAGCATAAGAACTACGCTCCA
CTAGGCAAGCAATGTACACGACAACATTCCGACGCGACGTGATTATGTAT
CGATCTTACACAGTAATATAACATGACTAGAAGAATACACACATCGAATG
TGAGGGTGAGTGTTAGGTATTACACACAATATNATAATGTACAGTCTATG
ACCACGCATCATACGGTCGTAGCTGCATAACTCCTCACAGACATGATACT
AGATTGAGATCACCTATGCTTTAGACGTGCTGTGGACTTAGAAGACGGAA
TCATTACTAACAACATCACAGAACGATGAACATAATCACCACTACCATAC
ATGAATACAGAANATAACGAGGGACAGGCAGGAGTCTGGATGATACTAGA
TTCTATAATTCGTCTCATATGCTATCTATATCTCCTCCTCTATCTGTGCA
TCTGCTCACAATCGTACTACGCGAGTTTCCTTTGTCGAGTTAGTACACGA
ACCATACATCNGATTGCATGTAATATACTCAGTGAGTCATCGATATAAGA
AGTGACTAGAGTGCATCGCGTGCCCTGTCGTATGCAGCTGGAGCCGCGAC
ACGCANTATCGCTGCTCGCCAACGTAATGATCGTNTGATCTCACACCACG
TCTGCCTCCATGCTAACGAGATACAATCAAACTAGCGAGTCATCTCTCTA
CAATCCGACATCTTACTACAAGATACTTACATATTATATACACAACATAA
TCTACNCAGTGATANAANCTGCGTANTTGTAGTTATGATGAGTATATGTT
TGAATATCAGATCGCTNGTCATGAAGTAATATANTGAGTTACGCTCACAT
GTTAATGGTATTATATGCATAGTATCGCTATACACCCATCAGTATATNAN
ATATCCACGTGTACCTATACNATCATCAGTANATGANTAGTNCGAATGCG
AGTGTAAGACTGATATATGTAGCGTCTTACAGCGCGTCCGTCTTATGACT
GTATACGAGTGN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTAGCCAGAGGGGTCTCTGGAATG
ATGTGGAGGTTACCTTCCTTGTCCTCATCCAGGAGCTGATAGACGTAGAG
GACTGGATCCTTCTTGTAGGAAATGTAAAAATAGTCCTGTAAGAATGGCA
CCTGGGCTAGCACCATCCCACTCCAGTTGTCCTCAGAGCCATCTTTCCCC
TTAAAGGAAAGATGTATTGTACCTCTCTGCAAACCAGGGCGCTGGAGAGG
TGGACATCCCTCAGCTGAAGAAAAACTACTTTGTGAGGCAAGACCTTAAG
ATTTAAAATCCTTTCTTCGCTGCCCCCTCCCGTCCGTAGACACTGTCAAT
TCCGTCATACTTCACCAAATAAAGAGAAAGATTTGTTGGCAGTTGACCTA
GAATGATGGCCTTCCAATGGGTGACAGGCTCATTACCTTCCTTCCACCCG
TGAGAAATTCTGCAGCCAACAATATTCCCCAGGGCCTGGGAAGAAGGCTT
CCTCCTACTCTTCTTCTTGAGTGATGTCAAGCTCAGACTCTTCAGAGGTA
TTGTCTTCTACCTGGCTGTAGACCTGTTGTGCTAGATCACACTGTCTTGT
GGCTTCCATTCTCTTCAATATCATACTTGCCCTTTGCCTGGGACTGAAGA
TCCTGCCCATTTACACCAGACACAATGCTGTTGCCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_f15.g1 MSMg01no234_f15.g1 CHROMAT_FILE:
MSMg01no234_f15.g1 PHD_FILE: MSMg01no234_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:19 2005
         (257 letters)



>mm_chrY_1592995_1593651
          Length = 657

 Score =  275 bits (142), Expect = 2e-78
 Identities = 236/276 (85%), Gaps = 21/276 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttggcagttgacctagaatgatggccttccaatgggtgacaggctcattaccttcctt 60
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttggcagttgacctagaacaatggccttccaatgggtgacaggctcattaccttcctt 260

                                                                       
Query: 61  ccacccgtgagaaattctgcagccaacaatattccccagggcctgggaagaaggcttcct 120
           ||| || ||||||||||||||||  |||||||||| ||| ||||||||||||||||||||
Sbjct: 261 ccaaccatgagaaattctgcagctgacaatattcctcagagcctgggaagaaggcttcct 320

                                                                       
Query: 121 cctac-tcttcttcttgagtgatgtcaagctcagactcttcagaggtattgtcttctacc 179
           ||| | ||||||||||||| ||||||| |||||| |||||||||||||||| ||||||| 
Sbjct: 321 cct-cgtcttcttcttgagggatgtcatgctcagcctcttcagaggtattgccttctaca 379

                                                                       
Query: 180 tggctgtagacctgttgtgctag-----atca---------cactgtcttgtggct-tcc 224
           |||||||||||||| |||| |||     | ||         ||||||||||||||| || 
Sbjct: 380 tggctgtagacctggtgtggtaggccacagcaaccctggtccactgtcttgtggctatc- 438

                                               
Query: 225 attctct--tcaa-tatcatacttgccctttgcctg 257
           ||||| |  |||| ||||| |||||||| |||||||
Sbjct: 439 attctgtgttcaagtatcaaacttgcccattgcctg 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)