BAC Information

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BAC

Clone NameMSMg01-237C17
ChromosomeY (Build37)
Map Location 1,591,619 - 1,591,862
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
Downstream geneLOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237C17.T7 (MSMg01no237_c17.b1)MSMg01-237C17.TJ (MSMg01no237_c17.g1)
ACCAG402198AG402199
length758765
length of high quality
(start - end)
522 (127 - 648)568 (130 - 697)
definitionCHROMAT_FILE: MSMg01no237_c17.b1 PHD_FILE: MSMg01no237_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:55 2005CHROMAT_FILE: MSMg01no237_c17.g1 PHD_FILE: MSMg01no237_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATTGTTTCTTAAAAGATTTCAATATCATATGAAGTACCAGAAA
AATGAGTGAAAAATGACATTTGCCAAATGTGTTTAGAATCATTAAATTAC
ACACTTAAAAATAAATAAATCAATGGATTTATATAGTACATAAATAAAAC
TCCAATAAAACTTCTGAAAAGGCTTAACTAAATGTGATGCTTCTCATGTG
AGTTGTTATTTGTCATAGCACCTGTGATTTAGCTGTTAATAGTAGTGGGT
TTTATTACTTATGAATCAGACACCAATACATCCATGAAGGGGTAACACTC
CATTCCCTCAGGAGAAATAAATCAATTAAAAGTCATTGGATTAATTGATG
AGAATTTTTTCTGGTTAAAGCTGACTTGGCAGGAAGTTGGACAGATTGGA
GTGTCTCCCAGAAAGTGTAACACACATTAGAATGTAGGTGTTGTGAGGCT
ATAAGACATATTCACTATTTGTCACCTATTATTGAGTATTCTTGCTGTTG
GAGGTACTTACCCTTCACTTCTGCCATTATGGAAGTGGGTCTATACCTAG
TCAGAAGGAGGAGATTGGGATGAATAATGTTTGTGTGGGTTATGGAGCAG
GATAAACCTTAATGTTGCTGGATTTTTTTTTATCTCCCACTTGACAATCT
AGCGTCACCTTACGAGAGAGATCAATTGAAGAATTGTCTCTATTCACTTG
TGTTTTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAAACAAATCCAGTTTTTTTG
CGGTACAGTAGTGCTCTTGATTACACGGTCATCTATTCCCATTAAGAAGT
CTTTTTAAGAAATCCAATATTAACATGCAGAAAAGAGACCAGGTAGAAGT
TAAGAAAGATTAAATTGATGCTGACCTTTAAAAACAATAAAGGACACACA
AAGGACTAGAGGACACTGAGGGACAAATGAATTCTAAGATGAAGTTCTCA
AAATGTGAAGCAGGAGACCCAGGAAGAATAGAAATTTTCTGCAAGTAGTT
AAAATTGGGCATATCCACATTAGGTTCTTTGGCTTCTTAACAAATAGCCA
GCTGATCAGATCAAAGAGTAATTTAAAAGAGAAAAAAATAAACTGTGAGA
TAATATATGGTGGGGCGTGGATCCTGAGTTCTTTCCCTGTGCAATCTTTG
CCTGGGATGAATCCTGTGATCTTTTGGAGGTCTCTGTTGAGTGCCCCAGA
TGACCATCAAAAAGCTCACCACTGGCCTGTTCCTCTGGCTCTCCTCCAAA
CATCTGACTCCCAACATACCTATGTACCATTTCAGCCTGTCTATTCCCTG
GAAATTCCTGTCTCAAATTTATGTGTGACCTCCTTCTCATAAAACAGTGA
AGGTGTACTCAATGCATATGTGCTGATCTCTTTTCTATGCCAGTTCTCAT
GGATTTCAAACTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_c17.g1 MSMg01no237_c17.g1 CHROMAT_FILE:
MSMg01no237_c17.g1 PHD_FILE: MSMg01no237_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:55 2005
         (568 letters)



>mm_chrY_1591393_1592361
          Length = 969

 Score =  290 bits (150), Expect = 2e-82
 Identities = 222/246 (90%), Gaps = 5/246 (2%)
 Strand = Plus / Minus

                                                                       
Query: 27  taagaaatccaatattaacatgcagaaaagagaccagg-tagaagttaagaaagattaaa 85
           |||||||||||||||| ||||||||||||||||||||| | |||| |||||| ||| |||
Sbjct: 470 taagaaatccaatattcacatgcagaaaagagaccaggat-gaaggtaagaatgatcaaa 412

                                                                       
Query: 86  ttgatgctgacctttaaaaacaataaaggacacacaaaggactagaggacactgagggac 145
           |||||| ||||||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 411 ttgatggtgacctttaaaaggaataaaggacacacaaaggagtagaggacactgagggac 352

                                                                       
Query: 146 aaatgaattctaagatgaagttctcaaaatgtgaagcaggagacccaggaagaatagaaa 205
           ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 351 aaatgaattctaagatggagttctcaaaaagtgaaccaggagacccaggaagaatagaaa 292

                                                                       
Query: 206 ttttctgcaagtagttaaaattggg-catatccacattagg-ttctttggcttcttaaca 263
            |||||| || |||| ||| ||||| ||||| |||||| || |||||||| || ||||||
Sbjct: 291 gtttctggaaatagtcaaacttggggcatattcacatt-ggcttctttggttttttaaca 233

                 
Query: 264 aatagc 269
           ||||||
Sbjct: 232 aatagc 227


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space:   535122
Effective search space used:   535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)