BAC Information

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BAC

Clone NameMSMg01-264H23
ChromosomeY (Build37)
Map Location 1,657,094 - 1,657,383
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264H23.T7 (MSMg01no264_h23.b1)MSMg01-264H23.TJ (MSMg01no264_h23.g1)
ACCAG406028AG406029
length743769
length of high quality
(start - end)
314 (46 - 359)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no264_h23.b1 PHD_FILE: MSMg01no264_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:41 2005CHROMAT_FILE: MSMg01no264_h23.g1 PHD_FILE: MSMg01no264_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAATTTTTATACAAATGGATGGATCTGGATGATATCTTCCTA
AGAGAGTTAACCCAATCACAAAAAACACACATGATATTCACACATTGATG
AGTGGATATTATCCCTGAAGCTCAGAATAACCAAGGTAAAATGTGCAAAA
CCCATGAAACTGAAGAAGGAAGACCAAAGTGTGGATATGCCGTTCCTTCT
TAGAATGGGGAACCAAATAATCATGGAGGGAGTTACAGAGACAAAGATTG
GAGCTGAGAATAAAAGAATACTTATACTGCCTCACTTGGGGATCCATCCC
ATATACAATCTCATANCTACTCCAGATCCCAACCAGGGATTGGGTGCAGG
AGAATGATATAGTTGTCTCCCCACACAAAAAAAATAATGCCTGACGGATG
GGGAAGTGGATGTTCACAGACATCCTTTGGACTTAGCACAGGGTCCCCAA
TTATGGAGCTGGAGAAAATACCTAAAGAGCTTAAGGAGCTTGTAGTTCCC
TAGAATATAAAACACATGTACTAATCAGTTCCCCACATTTCCCTGTTATT
TAGTCCACAATCTATGAAAAAATATTATGGTATATATGATTCCAGCTATT
TTTTTTTCTTTATATGATCTACCTCTCCTTTCTGTTATTATACATGTTTC
TTCTGCATTTTTCCTATCTTATATTAGATTCTATTTATTTTTA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGACCAAGAGTAAGCTAATACACT
ATATAAAGCTGTACTGAGAAGCATTACGAAGGCAGGTATCTCACTCTGAC
CAGGGCTAAGGTTGTTTCGACTGTATTGGCTTTATTCTTCTGGAGATTCT
TGTCAGGAATTGCGAGCATTTACCAGACCACAACAGGAAACCTTCCATAT
GTCTCCTTTGGTGTCTGGGCATAGGATATGTGAGATGCATCAAGACTGAT
TAAAGGTCATGTTCCCTAGATGTGATACTGTTTCCAGGAATACGATGATA
TACAAAAGGTCAGCTCTTTTATTACCTCACGCCTCCCGTCTTTCTTGGCC
AATTAAAATTGGAGCCAAAACCCCACGAGACAATGTATGTATTGGACAGA
CTTGCTGCTATCACACAGGTCGTGGCTTCAATTTCCAGCAATTACATTGT
GACTGTTTCTCTGTCTCTCTATCTGTCTCTCTGTCTCTCTGTCTCTCTGC
CTCTCTCTCTTTCCTTCTAACTTTCCCACTCTCTGTATTGCTATCTCCAT
GTATCTCAGACTCAGTCTGTTGTTCACTCTTTCCCTCTCACTCCCTGGCC
CCCCTTTTCTTTCTCATCCTTCCCTGTAATTCCTGGATGATATGTTGGCT
GGAACCTCCTTTTGGCCTCCTGATGGTTAATGTTTTTCGAAGGTGTCCTT
GTCTTATTTATGTTTTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_h23.g1 MSMg01no264_h23.g1 CHROMAT_FILE:
MSMg01no264_h23.g1 PHD_FILE: MSMg01no264_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:41 2005
         (290 letters)



>mm_chrY_1656894_1657583
          Length = 690

 Score =  226 bits (117), Expect = 9e-64
 Identities = 252/301 (83%), Gaps = 22/301 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaccaagagtaagctaatacactatataaagc-tgtactgagaagcattacgaaggcag 59
           |||||| || |||||||| |||||| ||||||| | ||||||||||||||| || |||||
Sbjct: 490 tgaccaggactaagctaacacactacataaagcat-tactgagaagcattaagatggcag 432

                                                                       
Query: 60  gtatctcactctgaccagggctaaggttgtttc-gactgtattggctttattcttctgga 118
           ||| | |||||||||||| |||||||||||||| | ||||||||||||||| |||| || 
Sbjct: 431 gtaccacactctgaccagcgctaaggttgtttcag-ctgtattggctttatccttcaggg 373

                                                                       
Query: 119 gattcttgtcaggaattgcgagcat---t--taccaga-ccacaacaggaaaccttccat 172
           ||||| ||||| ||| ||   | ||   |  || |||| |||||||||||||||||||||
Sbjct: 372 gattc-tgtca-gaaatg---g-atacctgatatcagatccacaacaggaaaccttccat 319

                                                                       
Query: 173 atgtctc-ctttggtgtctgggcataggatatgtgagatgcatcaagactgattaaaggt 231
           ||||||| |||| | ||||||||||||||||| |||||||||||| || ||||||||  |
Sbjct: 318 atgtctctcttt-gagtctgggcataggatatatgagatgcatcaggaatgattaaactt 260

                                                                       
Query: 232 catgttccctagatgtgatac--tgtttccaggaatacgatgatatacaaaaggtcagct 289
           |||||||||||||| ||| ||  | ||| |||| || | ||||||| || ||||||||||
Sbjct: 259 catgttccctagatatgaaaccat-ttt-cagggatcctatgatatccacaaggtcagct 202

            
Query: 290 c 290
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)