BAC Information

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BAC

Clone NameMSMg01-268G13
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268G13.T7 (MSMg01no268_g13.b1)MSMg01-268G13.TJ (MSMg01no268_g13.g1)
ACCAG408848AG408849
length720723
length of high quality
(start - end)
315 (46 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_g13.b1 PHD_FILE: MSMg01no268_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:41 2005CHROMAT_FILE: MSMg01no268_g13.g1 PHD_FILE: MSMg01no268_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTCTACCTGGTTTTGATTCCCATATCCTGAGATTAAAGTCCTT
TCTAAGCAGATCTCAACACCTTTTTTTAAAATTTTCTGTCTCACAGTTCT
TGAAGAATAGATGGGGGAGCAGAGAAAATTTCACCCCAAAAAATTGGCAA
TTAGTGGCTGCAGGTGTGAGGGCCAGTTTTCTACATAGATTTGGCTCCTC
AGAGGCTGCCCATGTTCCAGTGGATGTGTTTCCCTAACCCCACATATGTA
GTCAGCACTAAATTCACTCAGTGGTCTTTATTAAAATGTGCATGGAATTA
AGGCTAAAAGTGTTATTTGGAGACCCGCCACACGCAATTCAAGGAGGACA
AGATGGTGATGGATTTACTCCAACTCATTATGTTTATGTACAAAGTTCTT
CAGCAAAACATTTAAAACTAAGTAAGTAAGTAAATAAGTAAATAAGTAAG
CAATAAGCAAGCAAGCAAGTAAGTAAAAAATAAATATATGTGTAAATAGA
CAAATATATTTTTATGCAATCTCACGTGCAATAGGCATGAAAGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTCTTTTCCTCTTTTCCTCCCCTTTC
TCTTCCTTTTTTCTTTTTACTCTTTCCCCCCCCCCCTTCCCCCTTTTCCC
CTTTAATTCCTTCCTATTTN
ACAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTAGCTTTAGACACTGACAGCT
GTGATGATTTAAGATAGGCAGCAGAGTGCTCACAGTATCACTAAGAGATG
AACATTAGCTTGTTGTCATATTCACCCACACTCACACATACATAAACACA
CACAAACACACACACACACATAAACACACACAACACTCACACAAACACAC
ACGCACTCACACACCCACACACACACACACACAAACGCACACCAGCCATT
GGAACACAAACCCCAGTAGTGACTCCCGTGACAGTTCTAAATATTTAGAC
ACAGTCCCTAGTTTATAAGTTCACTCGCGACACTAAGTCTTCAGGAACCA
TCCTGGAAAAAATGCATCAAACTTGCCCTTACATTAATAAGTGATTGAAT
CTTTGTGACTTCTTTCAATGTTGTTTTATTATAAGTGCCTCCAAGTAATG
ACTTGTCAAATATCTAAGCAATATCCAACTTTGTTCCCTGTCCTTCACCA
ATATTCTAGGTAGTCCTTGAGCGGATCCTGGGCTTGGAATTCAGTAAGAA
TGTTACCTGTAACAACCAGAGTTACCTCTAGTATTATAAGAGAGATTGTG
ACAGCCATTGCTATATACTACATAGAGTTAGAAATCTCAGGACAACTTTA
GGAAAGTATGTTTTGAATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_g13.b1 MSMg01no268_g13.b1 CHROMAT_FILE:
MSMg01no268_g13.b1 PHD_FILE: MSMg01no268_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:41 2005
         (315 letters)



>mm_chrY_2603455_2604170
          Length = 716

 Score =  145 bits (75), Expect = 3e-39
 Identities = 96/105 (91%), Gaps = 5/105 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctctacctggttttgattcccatatcctgagattaaagtcctttctaagcag 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 248

                                                        
Query: 65  atctcaacaccttttt---ttaaaattttctgtctcacagttctt 106
           | |||||||  |||||   || ||||||||||||||||| |||||
Sbjct: 247 acctcaaca--tttttgtttttaaattttctgtctcacaattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space:   216342
Effective search space used:   216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)