BAC Information

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BAC

Clone NameMSMg01-278N23
ChromosomeY (Build37)
Map Location 258,993 - 259,681
singlet/doubletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278N23.T7 (MSMg01no278_n23.b1)MSMg01-278N23.TJ (MSMg01no278_n23.g1)
ACCAG416389AG416390
length743747
length of high quality
(start - end)		701 (43 - 743)349 (386 - 734)
definitionCHROMAT_FILE: MSMg01no278_n23.b1 PHD_FILE: MSMg01no278_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:20 2005CHROMAT_FILE: MSMg01no278_n23.g1 PHD_FILE: MSMg01no278_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCACAGAGTTACCGATGGCAACCATAGTTTTCTAGGTATTGGGTCTT
TCTGTTTGTTTTATACCTTTGATCCTTTGACCAACTTGTTACAAAGACAA
CTGCTAATTCCTCTTACTCAAAAAAGTTCTTGACTGTAATGAACATTTCA
CTTCATGGGCAATTGTTGTTTTTCATTTTTTTATAATTTTATTTATTTTA
ATTTGGATTTTTTTGCTTTTTACTTTTTATATGTGTTATAGTGTCTCTGT
TGTCCACAAAGACATCTAAATTGTGTTCTTTAGAGTGCTGAAATTTAGAA
TCATAAGCATATGTCACAATACCTGACTTAACTAAGAATCTTTTGTGAGG
TGTTCTTGTGCATGGAGAGTTGTTGTATAATTAATACAGTGGTATGATGG
TAGATCCTTTTCTTAGTAGGATCACTTTCTCAAAAAACAAACAAACAAAC
AAGACAAAGATGACCATCAAATAGATCTAACAATAGGTAAGAAAACCAAC
AAACCAAAACTAGCATCTCTAATACAAAGTCACAAGTACACTATAAGACT
AGTGATGAAATAAAGGCAGATGACTCTAGTAGTATCAAAAAAAGTAAAAC
CTGTCACAGCATATAAAGGTCAAGAGGGTCTGATAGAATGGCTGATACAT
TAAATGATAAAGTTGAATATGACAACATAATAAAATGTTACCT

CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCAACCATATGAAGCTTAATAAG
AAGCAAGGCCAAAGTGTGTATGCCTCAATTCCACTTAGAAGGGGAAACAG
AATAATTATGGGAGGCAGAGAGAGAGGAACCTGAGTGGGAGAGGAGTCTG
GAGAGGAAAAGAGGGGATCAGGATTAAGGTATAGGAAGGGACAGGAGAGA
AGTCCAAAGGCCAGGAGAATAAACAGAAATATGTAGCAGTGGGGTGTGGG
GAACAGAAGGAAACCACTAGAAGGTCCCTGACCCCAGGGATGGGAGAGGC
TCTCAGGACCCATTTGTTTATGACATCACCCACAAAGCCCAAGAGCAGGG
AGACAGAACCTGAAGAGACCACCTTTAGTGGACAGACATGGCTCCAAGTT
GAGGAATGGGGTCACCCACTAATCTCAAAACTTTTAACCCAGAATTTTTC
CTATCTAAAGGAAATGCAGGGACAAATATAAAGATTGAAGGAAAGGCCAC
TCAGAGACTGCCCTACCTTGGGATCCATCCCATCTGCAGACACCAAACCT
GACACTATTGCTGATGCCAAAATATACTTGCAGGCAGGAGCCTAGTATGG
CTGTCCTCTGAGAGGCTCTGTCAACACCTGACTTAGACAAATGACTCACA
GCCAAACATCGGACTGAGCACGTCAACACCAGTGGGAAAGTTAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_n23.b1 MSMg01no278_n23.b1 CHROMAT_FILE:
MSMg01no278_n23.b1 PHD_FILE: MSMg01no278_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:20 2005
         (701 letters)



>mm_chrY_258581_259681
          Length = 1101

 Score = 1309 bits (677), Expect = 0.0
 Identities = 686/689 (99%)
 Strand = Plus / Minus

                                                                        
Query: 13   cacagagttaccgatggcaaccatagttttctaggtattgggtctttctgtttgttttat 72
            ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 cacagagatactgatggcaaccatagttttctaggtattgggtctttctgtttgttttat 1042

                                                                        
Query: 73   acctttgatcctttgaccaacttgttacaaagacaactgctaattcctcttactcaaaaa 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 acctttgatcctttgaccaacttgttacaaagacaactgctaattcctcttactcaaaaa 982

                                                                        
Query: 133  agttcttgactgtaatgaacatttcacttcatgggcaattgttgtttttcatttttttat 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981  agttcttgactgtaatgaacatttcacttcatgggcaattgttgtttttcatttttttat 922

                                                                        
Query: 193  aattttatttattttaatttggatttttttgctttttactttttatatgtgttatagtgt 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  aattttatttattttaatttggatttttttgctttttactttttatatgtgttatagtgt 862

                                                                        
Query: 253  ctctgttgtccacaaagacatctaaattgtgttctttagagtgctgaaatttagaatcat 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  ctctgttgtccacaaagacatctaaattgtgttctttagagtgctgaaatttagaatcat 802

                                                                        
Query: 313  aagcatatgtcacaatacctgacttaactaagaatcttttgtgaggtgttcttgtgcatg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  aagcatatgtcacaatacctgacttaactaagaatcttttgtgaggtgttcttgtgcatg 742

                                                                        
Query: 373  gagagttgttgtataattaatacagtggtatgatggtagatccttttcttagtaggatca 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  gagagttgttgtataattaatacagtggtatgatggtagatccttttcttagtaggatca 682

                                                                        
Query: 433  ctttctcaaaaaacaaacaaacaaacaagacaaagatgaccatcaaatagatctaacaat 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  ctttctcaaaaaacaaacaaacaaacaagacaaagatgaccatcaaatagatctaacaat 622

                                                                        
Query: 493  aggtaagaaaaccaacaaaccaaaactagcatctctaatacaaagtcacaagtacactat 552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  aggtaagaaaaccaacaaaccaaaactagcatctctaatacaaagtcacaagtacactat 562

                                                                        
Query: 553  aagactagtgatgaaataaaggcagatgactctagtagtatcaaaaaaagtaaaacctgt 612
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  aagactagtgatgaaataaaggcagatgactctagtagtatcaaaaaaagtaaaacctgt 502

                                                                        
Query: 613  cacagcatataaaggtcaagagggtctgatagaatggctgatacattaaatgataaagtt 672
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501  cacagcatataaaggtcaagagggtctgatagaatggctgatacattaaatgataaagtt 442

                                         
Query: 673  gaatatgacaacataataaaatgttacct 701
            |||||||| ||||||||||||||||||||
Sbjct: 441  gaatatgaaaacataataaaatgttacct 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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