BAC Information

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BAC

Clone NameMSMg01-295L07
ChromosomeY (Build37)
Map Location 1,489,538 - 1,489,770
singlet/doubletsinglet
Overlap genenone
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
Downstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L07.T7 (MSMg01no295_l07.b1)MSMg01-295L07.TJ (MSMg01no295_l07.g1)
ACCAG423525AG423526
length753766
length of high quality
(start - end)
243 (126 - 368)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no295_l07.b1 PHD_FILE: MSMg01no295_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:42 2005CHROMAT_FILE: MSMg01no295_l07.g1 PHD_FILE: MSMg01no295_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTATGTGTTCGTGATCACAAAGTCTAAAGGATCCCAAGCTGGGCT
TGAACTTAACATATAGCATCATCCGACATTGAAATGCTGAACTTCCTGAA
TCTACTTTTCCAGTGAAGGTAACACAAACACTACTTTTGAAGTACTCTAT
TGAACTGGCAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAGAAA
AAAAGAAAAAGAATTGAAAATATTACCCCATGTCTTCATCTCCTTTTACT
TGAGGCGATATATTTTCATCTTTACCAATTGCTGGGTTATTTACTGTATT
GACAATAGAAAATGTTATCATTTGAAAGCATGCCATATTAGTAATAGTTA
ATAAAGTACTATCAATCCCCCCCCCCCTAGAAAAAACTGCCCATTTTGAG
TTTTTGAAACACATTTTACAAATTAAGTAAAATTAAGTACATCCAGGAAA
TCTAGTACACAAGGAGAAGAAAAAACATAAGGATAACAGGTATAGATGAG
AAGTAAGATTTCCAAATTATAGGGTCAGTGAATATCTTTCAACAAACTAT
AAAAGAAACCTTTCCTAACCTAATGAATGAGATGTCCATGAATCTACAAG
AAGCATGCTTAACTCCTAATGGTTTGGACCATAAAAACAACACTAAAAAA
AAAAATCCCTGCCATCCAATATTAATCTAAAGACCCTATGCTCCAAACAA
ATT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATATCATATGAAGTACCAGAAAAT
GAGTGAAAAATGACAGTGGTGAATTGTGTTTAGAATCATTAAATTACACA
CTTAAAAATAAATAAATCAATGGATTTATTTAGTATATAAATAAAACTCC
AATAAAACTTCTGAAAAGGCTTAACCGAATGTGATGCTTCTCATGTGAGT
TGTTATTTGTCATAGCACCTGTGATTTAGCTGTTAATAGTAGTGGGCTTT
ATTACTTATGAATCAGACACTAATACATCCATGAAGGGGTAACACTACAT
TCCCTCAGGATATTTTTTCTATTCCCACCCATTGGATTTCTTGATGAGAA
TTTTTCTGGTCAAACCCCACCCGGCAAGAAGATGAAAAGATTGGGGTGTC
TCCCAGAAAGTGTAACATACATTATAATGTATGTGTTGTGAGGTTACAGG
ACATATTCACTACTTGTCACCTATTATTGACCATCCTTGCCGGTGGAGGT
ACTTACCCTTCTCTTCTGCCAAGTAGGCCAGTGTGCCCATAACTATACTG
ATTGTAAACCCCCGCTGATGCCTACTGTCTTCATTGGTTCATTTATACAT
TACGAAATAATCCCTTTCTTCCCCCTATATTCCTTTCCCCCCCTTCTTTT
TCCTCATCTTCATCATTCCCGCATCTTTATTCTTCCTCCATCTTCCTTCT
TTCCTCTTCTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l07.g1 MSMg01no295_l07.g1 CHROMAT_FILE:
MSMg01no295_l07.g1 PHD_FILE: MSMg01no295_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:43 2005
         (287 letters)



>mm_chrY_1489289_1489976
          Length = 688

 Score =  230 bits (119), Expect = 6e-65
 Identities = 206/235 (87%), Gaps = 5/235 (2%)
 Strand = Plus / Plus

                                                                       
Query: 50  tgtgtttagaatcattaaattacacacttaaaaataaataaatcaatggattta-tttag 108
           |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 250 tgtgtttagaatcattaaattacacacttacagataaataaatcaatggatttattttag 309

                                                                       
Query: 109 tatataaataaaactccaataaaact-tctgaaaaggcttaaccgaa-tgtgatgcttct 166
           ||| ||||| | ||| ||||||| || | |||||||||||  || || |||| |||||||
Sbjct: 310 tatgtaaattatacttcaataaagctgt-tgaaaaggcttggcc-aactgtggtgcttct 367

                                                                       
Query: 167 catgtgagttgttatttgtcatagcacctgtgatttagctgttaatagtagtgggcttta 226
           |||||||||||||||||||||| || |||||||| |||||||||||||||||||  ||||
Sbjct: 368 catgtgagttgttatttgtcatggctcctgtgatgtagctgttaatagtagtggatttta 427

                                                                  
Query: 227 ttacttatgaatcagacactaatacatccatgaaggggtaacactacattccctc 281
           ||||  ||||||||||||| |||| | ||||||| || ||||||| | |||||||
Sbjct: 428 ttacagatgaatcagacaccaatatagccatgaatggataacactcccttccctc 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)