BAC Information

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BAC

Clone NameMSMg01-301G15
ChromosomeY (Build37)
Map Location 2,890,679 - 2,890,996
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301G15.T7 (MSMg01no301_g15.b1)MSMg01-301G15.TJ (MSMg01no301_g15.g1)
ACCAG427623AG427624
length747751
length of high quality
(start - end)		324 (34 - 357)498 (64 - 561)
definitionCHROMAT_FILE: MSMg01no301_g15.b1 PHD_FILE: MSMg01no301_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:48 2005CHROMAT_FILE: MSMg01no301_g15.g1 PHD_FILE: MSMg01no301_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTATTC
TCCGTTTGCAGTTGTAAATGCTCGTGAGAGCAACGAACTCCCTTTTTCAG
ATGGAAAAGGGTTACTGACAGACATGTCGGGAGAAACCGGCTGCCACCCT
GTGGGACATCCCAGGAGTTCTGAGGGAGTTCCAGGGATACCTGGAGATCT
CCTATCAGTGTGCCAAGTGAGAGTTTGCTCACTCGACTGTCTGTTTCTGT
TACTGGGTGCCAAGTGAGTGTGTGCTCTCGGCCATCTTATTGGGGCCTGG
TCTTGGTTATTGTAATCTTTTTTGTGTATATATTTTTTTCCCTGTATGTG
ACTCTGATGTTGTGACTGACCCCCACCCTGCCACTTGGACTGACCCTTGA
TCACTGGACTGAAAGTAAGACTAACACATTATCTCTGTGGATGCCTGAAA
TAGATTTTAGAGAACTTTCTGCTCTACAGAATGGCCAGCTTTGATGATAG
TTGGTCACTAGAGGGCACTCTTTGTTTGGTTCTGTTTTCAGCTCTTACAG
CTGTTTTACAGAGGGGATTATGGTCTCAGCCATGATATGTGCCCTACATT
CTCATCTACAATAATTCATTATGGGATCCCCCCTTCTCCATTTTGTTTAA
AGCCTTGTGTTCCAAAGAATATTCCAGGCTCCCCAGTCCCTGTTCCTCTG
CCTTCCTGAGGGGGGTAACAATTTTTCTACCTGTCTCATTGTTTTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTGATATTTCCAAGACTTTTATCATGAATGGGTTTTG
GATCTTGTCGAATGCTTTTTCCACATCTAACGAGATGATCATGTGGTTTT
TGTCTTTGAATTTGTTTACATAATGGATTACGTTGATGGATTTTCATATA
TTAAACCATCCCTGTATCCCTGGGATGAAACCTACTTGGTCAGGATAGAT
GATTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAGGA
TTTTTGCATCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTAACTTG
TTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGTTTTATAGAAT
GAGTTGGGTAGAGTTCCCTCTACTATTATTTTGTGGAATAGTTTGTGCAG
AACTGGGATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACC
CATCTGGTCCTGGGCTGTTTTTTGGTTGGGAGACTATTAATGACTGCTTC
TATTTCCTTAGGGTATATGGTACTCTTTAGATCATTAACTTGATCCTGAT
TTACCTTTGGCACCTGGTGTCTGCCCACAACTTTGTCCTTTTCATCCAGT
TTTTCCAGCTTCATTGAGCACACCCTCTTGTACACAGACCTGATGTTGTT
TTCGCTCCTTTCCTATACTTGTTTGTATTCTCCTCCTTTCTATCCTTGAC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_g15.b1 MSMg01no301_g15.b1 CHROMAT_FILE:
MSMg01no301_g15.b1 PHD_FILE: MSMg01no301_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:48 2005
         (324 letters)



>mm_chrY_2890475_2891204
          Length = 730

 Score =  427 bits (221), Expect = e-124
 Identities = 293/319 (91%), Gaps = 8/319 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactattctccgtttgcagttgtaaatgctcgtgagagcaacgaactcccttttt 64
           ||||| ||||||||| |||| |||||||| |||||||||||||||||||| ||||| |  
Sbjct: 205 gaatttactattctcggtttacagttgtacatgctcgtgagagcaacgaaatccctctcc 264

                                                                       
Query: 65  cagatggaaaagggttactgacagacatgtcg-ggagaaaccggctgccaccctgtggga 123
           ||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct: 265 cagatggaagagggttactgacagacatgt-gaggagaaaccggctgccagcctgtggga 323

                                                                       
Query: 124 catcccaggagttctgagggagttccagggatacctggagatctcctatcagtgtgccaa 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 catcccaggagttctgagggagttccagggatacctggagatctcctatcagggtgccaa 383

                                                                       
Query: 184 gtgagagtttgctcactcgactgtctgtttctgttactgggtgccaagtgagtgtgtgct 243
           | |||||| ||||||||||  |||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 gagagagtgtgctcactcggttgtctgtttctgttactgggtgccaagtgagtgtatgct 443

                                                                       
Query: 244 ctcg--gccatcttattggggcctggtcttggttattgtaatcttttt-tgtgtatatat 300
           |||   |||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 444 ctctcagccatcttattggggcctggtcttggttattgtaatctttttctgggtatatat 503

                              
Query: 301 t---tttttccctgtatgt 316
           |   |||||||||||||||
Sbjct: 504 tgtttttttccctgtatgt 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 730
Length adjustment: 9
Effective length of query: 315
Effective length of database: 721
Effective search space:   227115
Effective search space used:   227115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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