BAC Information

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BAC

Clone NameMSMg01-309A16
ChromosomeY (Build37)
Map Location 1,752,140 - 1,752,291
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
Downstream geneLOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309A16.T7 (MSMg01no309_a16.b1)MSMg01-309A16.TJ (MSMg01no309_a16.g1)
ACCAG432947AG432948
length743740
length of high quality
(start - end)
320 (45 - 364)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no309_a16.b1 PHD_FILE: MSMg01no309_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:31 2005CHROMAT_FILE: MSMg01no309_a16.g1 PHD_FILE: MSMg01no309_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACGTTGTTTCCCACTGTCTTTCATTATCTGTGTTATCCACACACT
TTTTTTGTATTAGTAATAAAACACCTGAGTATTTCTTTGACATTTGTATC
CATACCTATGTTTTTGTTTGACATCTGTGTTCACAGCAATGTTTTCTTAG
ACACTATACTCTGGTTTCAGGTACCATGGACTATGATTTAAATCTTCACT
TATCTCAGAAGAGATGTAAAATGCTATTAGGGCTCTTGAAGTCAGAAAGA
ATTAATATTCATGGCATAGTTTCTTTGGCTATAATGTTCACCGCCATAGA
ATACCAAAACTTTTATTTTTGTACCCCCTCTCCAACCACATGATAAGATT
GTGTCTTCCTTCAGTGCACCCCCCCTAGTTGTCAACTCAGTTTCTCCCTT
GACATTGTCTATTTTCAAGGAAGCTTGGGGAACACAAGAAGACCTGAAAG
CCAACACAAACCTTAGAAACTTGTAAGCATTTGAAGTCCACTTACAGATC
TCACTGTCCATACTAGTTATCCATCTCTCTGGAAGTAAAAGAGAGCAGTA
AAGTGACTTTGATTATTTTGGCTTTTATTACACACCCTGGACTTTTTAAA
TGATTGAATACTACTCCTGTGTCTATTGGGTTGTACAATTTGTGATTTCC
TAATTTTAAATGAACCATGCCCTTTTTCTCTACTTTAATCTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCCTTCCAAGACTTTTATCA
TGAATGGGTTTTGGATTTACTTAAACGATTTCTTTGCATCTAATGAGAAG
ATCATGTGGTTTTGTCTTTGAGTTTGTTTATATAATGGATTATGTTGATG
GATTGCCATATATTAAACCATCCCTGTACACCTGGTATAAAACCTACTTG
GTAAGGTTGAATGAAATTTTTAATGTGTTCTTGGATATGATTAGGGATAA
TTTTACTGAGTATTTTTGTTTCGATATTCATAAGGGCCACTGTTCTGAAG
TTCTTTATCTTTGTTGGATCTTTCTTGGTTTAGGTATCAGAGGAATTGTG
TCTTCATAGAATGAGCCGCCCCACAGTACCTTTTATTGCTATTTTGTGGA
ATTATTTGTGCAGAACTGGAATTAGATATTCTTTGAAGGTCTGATAGAAC
TCTGCATTAAACCCATCTGTTCCTGGGCCNTTTTTTTTTTTTTTTTTTTT
CTTTTTTTTGGTTGGGAAACTATTAATGCCTGCTTCTATTTCTTTAAGGT
ATATTGGTACTGGTTAAAAAAGCTAACCTTGATCCCGCTTTTAATTTTGT
TACCCTGGTATCTGGCCTAAAAATTTTGTCCCTATTTGTCCAGAGATTAT
CCTTGTTCCTGTTGAAAAATAATCGTTGTTTTACAACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_a16.b1 MSMg01no309_a16.b1 CHROMAT_FILE:
MSMg01no309_a16.b1 PHD_FILE: MSMg01no309_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:31 2005
         (320 letters)



>mm_chrY_1751775_1752495
          Length = 721

 Score =  155 bits (80), Expect = 4e-42
 Identities = 134/152 (88%), Gaps = 1/152 (0%)
 Strand = Plus / Minus

                                                                       
Query: 166 tctggtttcaggtaccatggactatgatttaaatcttcact-tatctcagaagagatgta 224
           |||||| |||||||||| | |||||||||| | |||||||| | ||||||||||||||||
Sbjct: 517 tctggtgtcaggtaccacgaactatgatttcattcttcactgtttctcagaagagatgta 458

                                                                       
Query: 225 aaatgctattagggctcttgaagtcagaaagaattaatattcatggcatagtttctttgg 284
           |||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||  | |
Sbjct: 457 aaatactatttgggcccttgaagtcaaaaagaattaatattcatggcatagtttcagtag 398

                                           
Query: 285 ctataatgttcaccgccatagaataccaaaac 316
           ||||||| || | |||||||||| ||||||||
Sbjct: 397 ctataattttgatcgccatagaagaccaaaac 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space:   221432
Effective search space used:   221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)