Query= MSMg01no323_l06.b1 MSMg01no323_l06.b1 CHROMAT_FILE:
MSMg01no323_l06.b1 PHD_FILE: MSMg01no323_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:33 2005
(628 letters)
>mm_chrY_1205034_1206063
Length = 1030
Score = 897 bits (464), Expect = 0.0
Identities = 594/646 (91%), Gaps = 22/646 (3%)
Strand = Plus / Plus
Query: 1 tatattctttaaatatgaatatacttattaataggaaaa-tttaaacatccacaaaaaag 59
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tatattctttaaatatgaatatacttattaataggaaaacattaaacatccacaaaaaag 260
Query: 60 gcaatgaaagaagagtttgtggaaattaggtttggtgttcagtaagaaccctccttagtg 119
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gcaatgaaagaagattttgtggtaattaggtttggtgttcagtaagaaccctccttaatg 320
Query: 120 agctggggcagtaggtcagttattctgtaccctccttgttatgctcatcttcagtgtttt 179
| || |||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aactagggcagaagatcagttattctgtaccctccttgttatgctcgtcttcagtgtttt 380
Query: 180 aacccttatttctcttccagcttagcagtgtttttaggtctagtagctcatgttgtcatg 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 aacccttatttctcttccagcttagcagtgttttaaggtctagtagctcatgttgtcatg 440
Query: 240 ctgagacaggcacaaaggctgtg-tggcgg-gtactggcttaagggatactggactagct 297
|||||| |||||||||||||||| |||| | | ||||||||||||||||||||| |||||
Sbjct: 441 ctgagataggcacaaaggctgtgctggcagag-actggcttaagggatactggagtagct 499
Query: 298 tcttcagtgggactttcagaatggcagccagtggctttcaggatagtgcttgtagaaggc 357
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 500 tcttcagtgggactttcagaatggcagccagtgactttcaggatagtgtttgtagaaggc 559
Query: 358 tagtttgaaagctatttttttt---tctattggttgctagagaaatgaaggatatgatta 414
||||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||
Sbjct: 560 tagtttgaaagctatattttttaaat--attggttgctagagaaatgaagggtatgatta 617
Query: 415 tggagttgtc-gtggggctggggaggaccgtgagggatgatccacatggattcagagtga 473
||||| || | ||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct: 618 tggagatg-ctgtggggctggggaggactgtgtgggatgatccacgtggattcagagtga 676
Query: 474 ggattcagttgttggctacaggagttgggtcagaagtgagtgagtgatgtgccaggactc 533
|||||||||||||||| | |||||||| ||||||||||| ||||||||||||||| ||||
Sbjct: 677 ggattcagttgttggccaaaggagttgtgtcagaagtgactgagtgatgtgccagaactc 736
Query: 534 ctggggttggcctcctttgctctttttgtgatgtttttat-----------ctgtagcat 582
|||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 737 ctgggggtggccttctttgctctttttgtgatgtttttattgtagccagttctgtagcat 796
Query: 583 ctctattccttgggtatttagtgctaggctcagcggcatttctcag 628
||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 797 ctctattccttgggtatttagtgctaggctcagtgacatttctcag 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1030
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1020
Effective search space: 630360
Effective search space used: 630360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_l06.g1 MSMg01no323_l06.g1 CHROMAT_FILE:
MSMg01no323_l06.g1 PHD_FILE: MSMg01no323_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:33 2005
(698 letters)
>mm_chr14_61975763_61976859
Length = 1097
Score = 1123 bits (581), Expect = 0.0
Identities = 602/609 (98%), Gaps = 1/609 (0%)
Strand = Plus / Minus
Query: 90 aaaaaatgtatttgtcgggactgaagagatggctcagcggttaagagcactgattgcgct 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 aaaaaatgtatttgtcgggactgaagagatggctcagcggttaagagcactgattgcgct 1038
Query: 150 tccaggacgtcctgagttcaagtcccagcaaccacatggaggctcaaccatctgtaatgg 209
| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1037 ttcaggacgtcctgagttcaagtcccagcaaccacatggtggctcacccatctgtaatgg 978
Query: 210 gatctgacgccctcttctggtgtgtctgaagacagtgacagtgtactcacatatataaaa 269
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 gatctgatgccctcttctggtgtgtctgaagacagtgacagtgtactcacatatataaaa 918
Query: 270 taattaatttcaaaaaaaaagtatttgttcaccacccagtttaagttgacttctcaagca 329
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 taaataatttcaaaaaaaaagtatttgttcaccacccagtttaagttgacttctcaagca 858
Query: 330 cagatacatgtcacatgacacaggcctccttccattcatagaaccttgatgcctggcctg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 cagatacatgtcacatgacacaggcctccttccattcatagaaccttgatgcctggcctg 798
Query: 390 gccctctcagcccccttcagatctggaggaagcctcctatagagcctgtggtggttgcct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gccctctcagcccccttcagatctggaggaagcctcctatagagcctgtggtggttgcct 738
Query: 450 cctgtgaagagctcttctgtgatggccctgccttagcttttcccacctaagttatacctt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cctgtgaagagctcttctgtgatggccctgccttagcttttcccacctaagttatacctt 678
Query: 510 tctccacagatggaagtgaccacccacaagcaccacaagctacttgattgacaccttaat 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctccacagatggaagtgaccacccacaagcaccacaagctacttgattgacaccttaat 618
Query: 570 ctctctgaaactgagactaattgttcaaaacctaatctaataactctacatcaatagaca 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctctctgaaactgagactaattgttcaaaacctaatctaataactctacatcaatagac- 559
Query: 630 attcttttttgctgttactaacaatgctttgggcagagtctttggacaccaacctcagag 689
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 558 attcttttttgctgttactaacaatgctttggtcagagtctttggacaccaacctcagag 499
Query: 690 gtttcagtg 698
|||||||||
Sbjct: 498 gtttcagtg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space: 747856
Effective search space used: 747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
