BAC Information

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BAC

Clone NameMSMg01-331L23
ChromosomeY (Build37)
Map Location 2,028,605 - 2,029,179
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840
Downstream geneLOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331L23.T7 (MSMg01no331_l23.b1)MSMg01-331L23.TJ (MSMg01no331_l23.g1)
ACCAG447965AG447966
length738736
length of high quality
(start - end)
621 (48 - 668)575 (74 - 648)
definitionCHROMAT_FILE: MSMg01no331_l23.b1 PHD_FILE: MSMg01no331_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:42 2005CHROMAT_FILE: MSMg01no331_l23.g1 PHD_FILE: MSMg01no331_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATACACGCGG
AATTCTCTTTTGTCTTTCAAAACTAGCTATGAGTGATTTTTAGTTTATAG
TAGTGTTTTTGAGATTTTTATTCAACAGATGCTCTTTGTTATCCTGCATC
AAAAATTTTAGAAATTGCATATTCTATAGGAAACACGATATATTTTTATG
ATTACTTTAAAGGTAATTTTTCTCCATTTTTTTCAAGTAACTTTTAAAAA
TTGTTTCCTTTATTTGAGGAGGGTAATAGTATAATTTGTCATCTTTTTTT
TTTCTCTTTCCACTTCTTCCGGTTTTTTTTTCATTAGTTTATCACATACA
TATACAGTACATATACAGTACATATATACTCCTAAATACATACCAATACA
GCTTGCTCAGTGTGTATAATGTTACCTGTATGTAGTTTTTAAGATTGATT
AATTTGAATTGGACAATCTACTTACAAGTGCTGTTCTTCCAGCACTGAAA
TGATTTTATTCTTTGGGCTCTCAACATGCCATTCTGTATTTTAAGCTTTA
TTGTGCAGATTGTAAAATACTACAATTCTCTTGTTTCTGTCTCAATTTTT
TTCCTTTCTGATAAAACAAACTGGTATATATTTCCATTAAGAAAGACATT
CTAAACCTCATGTTTGACTCAGTANAAGGTAATGTATGTAAGTTAAATTT
GGTTCTGTTGCCCTTTTCAGATTTTGGATGGAAAAGTC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATAAGATGTCCTGCTATGAGGAGCAACA
GTCATATGGGGGTCCTGTTACCTGGGTAACTGTAGAGAACTAGGGAGTTG
GTCTGTCCTCGCTGCCTTGAGAGGTATATGTTAAAGGTTTTTCACGTTAA
AACAGGCAGTGTTGAAGAAGTAGCATTTGTCTGTAGAATGTGGTGATTTG
AGTATGCTTGTCCCAGGGAATGGTGCTACTAGGAGGTGCTATTACAGCCT
AGTTGGAGTAGGTGTAGCCTTGTTGAAGGAAATGTGTCACTGTATGAGTG
GGCTTTGAGACCCTCCTCCTAGCTGTCTGAAAAACAATAGTCTTCTTCCT
TCCTTTGGATCAAGATGTACAACTCTCTGTTCCTTCCACTCCCATCTAAA
AGCACTGACGTGCTTCCTACCTTGATGATGGTCTGAACCTGTAAGCCAGT
GCCAACTAAATGCTTTTCTTTATAAGTGTTACCTTGGTCGTGGTGTCTGT
TCACAGCAAAGGAAAACCTAAGACAGAGAAGTTCTACGAACTTTGTTGCT
GGAGGAAGGAGGTAAGAGGGAAGTCATCAGTTGATAAAATTCCTGGAAAT
TATTAGAGAACTTCTGTCATCTTTCCCTCAAAAGAAGTTGTTCCTTGTTA
GAAAACTTAAAACTATCCATTTTTCTAACCTAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_l23.g1 MSMg01no331_l23.g1 CHROMAT_FILE:
MSMg01no331_l23.g1 PHD_FILE: MSMg01no331_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:42 2005
         (575 letters)



>mm_chrY_2028405_2029379
          Length = 975

 Score = 1104 bits (571), Expect = 0.0
 Identities = 574/575 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagatgtcctgctatgaggagcaacagtcatatgggggtcctgttacctgggtaactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagatgtcctgctatgaggagcaacagtcatatgggggtcctgttacctgggtaactgt 260

                                                                       
Query: 61  agagaactagggagttggtctgtcctcgctgccttgagaggtatatgttaaaggtttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaactagggagttggtctgtcctcgctgccttgagaggtatatgttaaaggtttttc 320

                                                                       
Query: 121 acgttaaaacaggcagtgttgaagaagtagcatttgtctgtagaatgtggtgatttgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgttaaaacaggcagtgttgaagaagtagcatttgtctgtagaatgtggtgatttgagt 380

                                                                       
Query: 181 atgcttgtcccagggaatggtgctactaggaggtgctattacagcctagttggagtaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcttgtcccagggaatggtgctactaggaggtgctattacagcctagttggagtaggt 440

                                                                       
Query: 241 gtagccttgttgaaggaaatgtgtcactgtatgagtgggctttgagaccctcctcctagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagccttgttgaaggaaatgtgtcactgtatgagtgggctttgagaccctcctcctagc 500

                                                                       
Query: 301 tgtctgaaaaacaatagtcttcttccttcctttggatcaagatgtacaactctctgttcc 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tgtctgaaaaacaatagtcttcttccttcctttggatcaagatgtagaactctctgttcc 560

                                                                       
Query: 361 ttccactcccatctaaaagcactgacgtgcttcctaccttgatgatggtctgaacctgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccactcccatctaaaagcactgacgtgcttcctaccttgatgatggtctgaacctgta 620

                                                                       
Query: 421 agccagtgccaactaaatgcttttctttataagtgttaccttggtcgtggtgtctgttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccagtgccaactaaatgcttttctttataagtgttaccttggtcgtggtgtctgttca 680

                                                                       
Query: 481 cagcaaaggaaaacctaagacagagaagttctacgaactttgttgctggaggaaggaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcaaaggaaaacctaagacagagaagttctacgaactttgttgctggaggaaggaggt 740

                                              
Query: 541 aagagggaagtcatcagttgataaaattcctggaa 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 741 aagagggaagtcatcagttgataaaattcctggaa 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)