BAC Information

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BAC

Clone NameMSMg01-332K06
ChromosomeY (Build37)
Map Location 2,432,592 - 2,432,774
singlet/doubletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332K06.T7 (MSMg01no332_k06.b1)MSMg01-332K06.TJ (MSMg01no332_k06.g1)
ACCAG448618AG448619
length1,3261,297
length of high quality
(start - end)
34 (43 - 76)654 (129 - 782)
definitionCHROMAT_FILE: MSMg01no332_k06.b1 PHD_FILE: MSMg01no332_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:18 2005CHROMAT_FILE: MSMg01no332_k06.g1 PHD_FILE: MSMg01no332_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNGCCGGCCTTGTNNNNCCATTCGCGCTAAGACTCCANAGGGAGAGGAT
CCGCGGAATTCACTCCTAGTCACTCCCCTCTAACTAGCCCAATAGNGGGG
NGATGGGCAAGCAATGAACCATAAAACAGCCACGCCANANCAGNGGCNGA
AACGNCACACGGCNGGNNANAAAAGCAGGGCCANNNNCCCGGANCGGGAN
CNNCCNGAGAAGCAAGCAANAAAGCCCNGGCNGAGGAAGAANCNGGNNNG
NNGCANCNNNCNNGCNGGNCGAGCNGGACGCAANAAGGGGGGCCAAAACC
CGGGAACGGNCANCACACCGGNGCAAGGAAGAACCCNCANNCACGGGGCA
GAACCAGAACGGNGGGACAAAAGGCCCNACAAGAAACGNACAACCNNGAA
ANNCCNCCAGAGNNAGAAGCCCNNNNGAAGGNNNGCANGGCGANNACACN
NNNCCNNNNGGCNNCGNNNNGNNNCCACCACGGGAACGGNNGACGGGNNC
NNAGNCGCAGNCAGGCCGGGACAGCGCCGGGACAGCAACCAANNCCAGGC
CCGGNCAGGACGGGACAGCGGCAGNAGGGGAACCNCCCANNCNANAGNAG
NGGGCNAACGCCCAGNCCNGAAGCAGGGNGGCCCAAAAAACGCCCCCAAG
ACCCAAGAGGGAANNGNCAGAGAGANAGACCGNGGNGCACCAGGGNAAGC
NGGCNCANNGNCAANAACGGNCGCCCCNNGGGACAAACCGAAAGGAGAAC
NAGNNAGGGAACAGCAGAAAGGCAAACNNAAAGCAGGGAAAAGGCGGCNA
NGAAANNGGNGAAANCAGGNNAAACAGAAGAAGAANGNCAGCAAAGGGNA
GAAGCAGGGCAGAAAGNCCGGGANGAAAACCAAGAAAGGCCANCAGAGGN
AGANCGGGGAGAGAGAGGAAAAAAAGAGAGGAAACAAAGGGCCCCCAAAA
AAAAAAGCCCCCCCCCGAAACCCGGAACAAAGGAAAAAAAAAGGGCGGGA
AAAAACCGGGGGGAGAAAAAAAAAAGGGAGGAAGGGGAAAAAAAAGGAAA
ACCAACCGGGAAGGCCCAAAGAAAAAAACCCCACCCCCCCCCCAAGAAGA
AAAAAGCAACCGGCCGGGCCCCAACCAAAAAGGAAANACCCCCCGGGGAA
CAACCAAAAAAAAAGCACGCGGGGGGGAAAGAACCCNCCAAAAAAAAAAA
ACCCACAAAAAAAAAAANCNAAAAAGGAAAACGGCGCCCCGAAGAAAAGG
GNAGGGGCCCCCCGGGGGCCCCCGCCCNGGGAGNNCCCCCNCCAAAAAAA
AAACAACCACCAAGGGGGGGCCGAAA
CCTATCTTTTNNNAACCAAGGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAAGACCGACCAGTGGNGT
GGGTAGCAGCAAAGTTCTCGTTTCTCAAAGACAACAGATACCATGGCTGA
ATATTCCAACTACAACAACTAGGTAACATTGGTTCTACACTTAGCATGCC
GTTTCTAGAAAAAAAAATTAAAGAATTAAGCAATGTTTCCTCTGAACCTG
ACATGTGACTATCACAAATGAAAGAAGGATCCATGATCACATGAATATGA
AAGGGGCATGAAGCAGCACAATTGTTCAAATTATTGGCAGCTAGTCAGCA
TTAACACAAGAAGGGACCAAAGACAATAAACAGCTTTGAAGACATGTCCA
AATGACCGCGTTCATTTACAAGTTTCTTACCCATTCCTTGTATATCCATT
GGTTGATTAACTCATTGATTAAAGCCCTCAGGTTCCAATCACTTTTCAGA
GTGCATATTGTACTACCTATGAACATTGTACTGTGGACCAAAGCCTTCAT
CTAAGACCCATGACTGACATTTCAAAACAATTTAACCACAGAATTCTTTA
TTTGAAACAAAGTGATAAGATCCATCTATCTCTTCAAGTATATCTCTGTT
TTGTTCAAAAAGGAGAAAAATGCAATCCAAGTTCAGGATCTTGATCCCTT
ATCCATGCATCTTAAACCCATAGGGGCTAGCCAGAATGTAAGGTCAGAAG
TCTAAACTTCACCTATACTACAACTAACTCTGAAGATATCTAGCAATCTC
CAGTTCCTTTCTGGTACTTACCCACACCAAGTCTGCATTAAGGAATATGG
TCTAGTGTGAGATAGTGCCAGCAGTTAATTGCAAAATCCCACTATGAGTT
GAGTTGTATATATACTGAAACATCTGTAATATAGACACACATGCATATTC
CCAAAATACTCCCCAGAAAGAGGCAAGAGTAAAAGGAACTGAAACCTTAA
AACCCTCAGGGAAGAGAAGAAAATCCTTGTAAGGCCCAAGTAAAAAAAAA
TTGTGGCTTTTCGCCAAAACCAGGAACTCTGTCTTCCATCCTGAAAGGGA
AGGTTCCTAACCCTTATCCCTATTGAAAAGGAATACACGTTGATAAAGAT
GAATATAAATTTTTCCCCAGGGATTGACTTTGAGGTTAAAATGTTCCTCG
CCCACTGGAACCCAAGTCTAAAATTTAGTGAAAACAATGTATTTAAGGTG
TGTTACAAGGGGAAAAAAAAAATCTATTTCGCAATCGATTATTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_k06.g1 MSMg01no332_k06.g1 CHROMAT_FILE:
MSMg01no332_k06.g1 PHD_FILE: MSMg01no332_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:18 2005
         (654 letters)



>mm_chrY_2432122_2433174
          Length = 1053

 Score =  230 bits (119), Expect = 2e-64
 Identities = 167/183 (91%)
 Strand = Plus / Plus

                                                                       
Query: 337 ttgattaaagccctcaggttccaatcacttttcagagtgcatattgtactacctatgaac 396
           |||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 471 ttgattaaagccctcagggtccaatcacttttcagaatgtatattgtactacctatgaac 530

                                                                       
Query: 397 attgtactgtggaccaaagccttcatctaagacccatgactgacatttcaaaacaattta 456
            |||||| |||||||||||||||| || |||||||||||||||||||||||| | |||| 
Sbjct: 531 tttgtacggtggaccaaagccttcctcaaagacccatgactgacatttcaaacccatttc 590

                                                                       
Query: 457 accacagaattctttatttgaaacaaagtgataagatccatctatctcttcaagtatatc 516
           ||||||| ||||||||| ||| ||||||||||| |||||||||||||||| ||| |||||
Sbjct: 591 accacagcattctttatgtgacacaaagtgataggatccatctatctctttaaggatatc 650

              
Query: 517 tct 519
           |||
Sbjct: 651 tct 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space:   671692
Effective search space used:   671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)