Query= MSMg01no340_g20.b1 MSMg01no340_g20.b1 CHROMAT_FILE:
MSMg01no340_g20.b1 PHD_FILE: MSMg01no340_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:26 2005
(607 letters)
>mm_chrY_2603455_2604462
Length = 1008
Score = 145 bits (75), Expect = 8e-39
Identities = 96/105 (91%), Gaps = 5/105 (4%)
Strand = Plus / Minus
Query: 5 gaattcatctctacctggttttgattcccatatcctgagattaaagtcctttctaagcag 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 248
Query: 65 atctcaacaccttttt---ttaaaattttctgtctcacagttctt 106
| ||||||| ||||| || ||||||||||||||||| |||||
Sbjct: 247 acctcaaca--tttttgtttttaaattttctgtctcacaattctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1008
Length adjustment: 10
Effective length of query: 597
Effective length of database: 998
Effective search space: 595806
Effective search space used: 595806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_g20.g1 MSMg01no340_g20.g1 CHROMAT_FILE:
MSMg01no340_g20.g1 PHD_FILE: MSMg01no340_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:26 2005
(552 letters)
>mm_chrY_1792267_1793218
Length = 952
Score = 298 bits (154), Expect = 7e-85
Identities = 273/360 (75%), Gaps = 78/360 (21%)
Strand = Plus / Minus
Query: 20 ggactgcaagcaggtcttctgaaaaagcaatgcatgatataattacctgaattttctggc 79
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct: 319 ggactgcaagcaggtcttctgcaaaggcaatgcatgatataattacctgaattttctgtc 260
Query: 80 agtgctcttcaatattgtgttctacgtgatgcaatattccactctctttctctatctctg 139
|||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 259 agtgctcttcaatattgtattctacgtgatgcaatattcctctctctttctc-------- 208
Query: 140 tctctgtctctgtccctctctgtctctgtctctctctgtctctttgtctctctctctctg 199
|||||| ||||| ||||||| |||||||||||||| ||||||||||
Sbjct: 207 tctctg--tctgt--ctctctg--tctgtctctctctg------------tctctctctg 166
Query: 200 tctctctgtatctgtctctgtctctgtctctgtctctgtctctgtctctctctctctctc 259
|| ||||||||||||||||||||||||||
Sbjct: 165 tc------------------------------tctctgtctctgtctctctctctctc-- 138
Query: 260 tctctttctctctctctctgtctgtctctctcaatatctattcctctaacactcagtatg 319
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 137 --------------------tctgtctctctcaatatctactcctctaacactcagtatg 98
Query: 320 actaatgattctcttatcttctcttctacaaaggggatgatattttaatgtcatctgcaa 379
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 97 actaatgattctcttatcttctctcctacaaaggggatgacatttgaatgtcatctgcaa 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
