Query= MSMg01no343_a13.b1 MSMg01no343_a13.b1 CHROMAT_FILE:
MSMg01no343_a13.b1 PHD_FILE: MSMg01no343_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:43 2005
(612 letters)
>mm_chrY_1655131_1656138
Length = 1008
Score = 418 bits (216), Expect = e-121
Identities = 472/562 (83%), Gaps = 28/562 (4%)
Strand = Plus / Plus
Query: 9 gaattctctgctgatctgcacaggaaagcacag-aaatctaggactatacagaaatatcc 67
|||||||||||||| ||||||||||| ||| || ||| |||||||||| |||||| || |
Sbjct: 209 gaattctctgctgaactgcacaggaaggcatagaaaaactaggactatccagaaaaatgc 268
Query: 68 aattccagaggaaa-aaaaaaaaaaagaaacagg-gaggaattggaaag-tacaaataag 124
| | ||||| ||| ||||| | ||| ||| ||| |||||||||| ||| | |||||||
Sbjct: 269 agtcccaga--aaagaaaaacagaaa-aaa-aggagaggaattggtaagcaaaaaataag 324
Query: 125 aatttgaatgtacagattgtaaatcctgtctctgggagtaataatcaaggta---ctttg 181
||||||| | |||||||||||||||||||| || ||||||||||| | ||||
Sbjct: 325 ----tgaatgt-ctgattgtaaatcctgtctctgagaataataatcaag--acaccttt- 376
Query: 182 aaaggaacaatcaagccatgtttaaaag-actggacacaccatttggcatatgttatata 240
||||||||||| || ||||| |||||| ||| ||||||| || ||||| ||||||||||
Sbjct: 377 aaaggaacaatgaaaccatgagtaaaagaactagacacacaatatggcaaatgttatata 436
Query: 241 aatcagtaaaaataattaaaaatgtctcattaaaattcacaacagtccccttaagttttt 300
|||||||| ||| |||||||||||| ||||||||| | | || | |||||||| |||||
Sbjct: 437 aatcagtagaaacaattaaaaatgtgtcattaaaaatgaaaatattccccttatgttttc 496
Query: 301 tcttctggtttt-cttctttaaatatcttattgaatctgaagtgatggctcag-catttc 358
|||| ||||||| ||| ||||||| |||||||||||||| || ||| | |||| | ||||
Sbjct: 497 tcttgtggttttcctt-tttaaatgtcttattgaatctggagggattgatcagac-tttc 554
Query: 359 tgaacactggcagctcatgcacagcatacacttggacttgccacat-ttccataggctgt 417
|| |||| | |||| ||| ||||||||||||||||||||||||| | |||||| |||| |
Sbjct: 555 tggacaccgccagcacatacacagcatacacttggacttgccac-tcttccattggctct 613
Query: 418 ttacaacttcttctattttagtaaccacagggaat-ccacactcccccttcccatgagac 476
|||||||| | |||| || ||| ||||||||| || |||||||||| ||||||||| |||
Sbjct: 614 ttacaactccgtctacttcagtgaccacaggg-atgccacactccctcttcccatgggac 672
Query: 477 aatgtatccatacctatacagagaattcaaaacaaacaaaatctcttcaatctgtctcac 536
||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 673 aatgtattcatacctatacagagaattcaaaacaaacaaaatgtcttcaaagtgtctcag 732
Query: 537 caatcatacattaggtccaatg 558
|||| || ||||||||||||||
Sbjct: 733 caattatgcattaggtccaatg 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1008
Length adjustment: 10
Effective length of query: 602
Effective length of database: 998
Effective search space: 600796
Effective search space used: 600796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_a13.g1 MSMg01no343_a13.g1 CHROMAT_FILE:
MSMg01no343_a13.g1 PHD_FILE: MSMg01no343_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:43 2005
(481 letters)
>mm_chrX_53358124_53359001
Length = 878
Score = 364 bits (188), Expect = e-104
Identities = 405/484 (83%), Gaps = 19/484 (3%)
Strand = Plus / Minus
Query: 1 ctactcaaagtcattggagacaacagcaaatctgttttgtccgaatggagaatggatgag 60
|||| ||||||| ||||||||||||| | || | ||||| | |||||||||||| |||
Sbjct: 494 ctacccaaagtctttggagacaacagggattccg-tttgttctaatggagaatgggggag 436
Query: 61 gatttgtgctccattaaaaaggtcaagaaattgactaatttgattcctgcctgtatattt 120
||| ||||||||||||||||||| | ||| |||| |||||| |||| |||| |||||
Sbjct: 435 tattagtgctccattaaaaaggtccttacattcactagtttgatgcctgtctgtctattt 376
Query: 121 gtgtgtgctttgtacttttttctgctttgtgttgtgctctgtgttcttgattattaactc 180
| ||||||| ||||||||| |||||| ||||||||| |||||||| ||| || ||||||
Sbjct: 375 gagtgtgctatgtacttttgtctgctgtgtgttgtgttctgtgttattggctactaactc 316
Query: 181 tagggtccttaccatacttgcaaaatgaaatatttctcagttggaaaagctctcattttt 240
|| ||||||||||||||||||||||||||| ||||||| ||||| || |||| ||
Sbjct: 315 tacggtccttaccatacttgcaaaatgaaa-----ctcagtttgaaaatctttcatattc 261
Query: 241 ttcctctgtatacaatatgattcttt-aaaaaata--agtttttgattcctttgtactaa 297
||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||
Sbjct: 260 gtcctctgtatacaatatgattctttaaaaaaatatcagtttatgagacctttgtac--- 204
Query: 298 tagtaagatcaaaatttctgggaagacacttttcattgaaaatacagt-ttttcattcaa 356
||| ||| | |||| | |||||| |||||| |||||||||||| | ||||||||||
Sbjct: 203 ---taacatctacattt-ttggaagatacttttaattgaaaataca-tcttttcattcag 149
Query: 357 tagattcagattactgtccccccaaatccttctacaacctctccacttctcgacccaccc 416
|| |||| |||||| |||||||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 148 tacattctgattacagtccccccaactccttctatatcctctccacttctctacccaccc 89
Query: 417 aaattcacactttttctttctccctttattaaaatacaaacaggcatctaaataataatg 476
|||||||||| |||||||| | |||||||| |||||||||||| ||||||||||| |||
Sbjct: 88 aaattcacac-ttttctttttttctttattagaatacaaacaggtatctaaataatgatg 30
Query: 477 atac 480
||||
Sbjct: 29 atac 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 878
Length adjustment: 10
Effective length of query: 471
Effective length of database: 868
Effective search space: 408828
Effective search space used: 408828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
