Query= MSMg01no345_b21.b1 MSMg01no345_b21.b1 CHROMAT_FILE:
MSMg01no345_b21.b1 PHD_FILE: MSMg01no345_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:30 2005
(485 letters)
>mm_chrY_1316274_1317154
Length = 881
Score = 414 bits (214), Expect = e-120
Identities = 417/488 (85%), Gaps = 20/488 (4%)
Strand = Plus / Plus
Query: 5 gaattcatatccaatggttaaaaatc-tgctttaatgccagctccatgggatctgagaac 63
|||||| |||||||||| | | |||| | ||||||||||||||||| |||| |||| |||
Sbjct: 205 gaattcgtatccaatggctcacaatcat-ctttaatgccagctccaggggacctgacaac 263
Query: 64 tcatgtctctgtggtcacctatactctcaagctcatgccctactcccacccatataaa-t 122
|||| ||||||||||||||| ||||| ||||| |||||||||| ||||| |||| ||| |
Sbjct: 264 tcatttctctgtggtcacctgtactcacaagcacatgccctacacccactcata-aaagt 322
Query: 123 aaagataataaatcttaaaatgagagacaagtttcatttggttttattattcaaatgaaa 182
||| |||||||||||||||| ||||||||||||||||| || || |||||| ||||||||
Sbjct: 323 aaaaataataaatcttaaaaagagagacaagtttcattaggcttcattatttaaatgaaa 382
Query: 183 ccat-attttgtctgatttctgagtctctttggatcagttttctgggttgcactttgtgt 241
|| | ||||| |||||||||||||||| |||||||||||||| |||||| || ||||||
Sbjct: 383 cc-tgattttctctgatttctgagtctgtttggatcagttttttgggtttaaccttgtgt 441
Query: 242 aacaaggccacattccttttatctatcactctttccccaacttgttgtttctccctgaga 301
||||| |||||||||||||||| ||||| |||||||| || |||||||| ||| |||
Sbjct: 442 tccaaggtcacattccttttatctgccactcgttccccaa-tt-ttgtttct-cctcaga 498
Query: 302 cttcataccagagatt----ctatgtgctgtctttctctgcttcttactaaaaatccatc 357
||||| |||||||||| |||||| | | |||| | || ||| ||||| |||||||
Sbjct: 499 cttcacaccagagattctacctatgt--t-tttttccc--ctacttcctaaacatccatc 553
Query: 358 ttttgctgccatccctgctcctctaagtcatatctccaattccttgctcactc-tgcaga 416
||||||||||||||||||||||| || || |||||||||| ||||||| || ||||||
Sbjct: 554 ttttgctgccatccctgctcctccaattcccatctccaatttcttgctct-tcatgcaga 612
Query: 417 ccacagaagctaagtcctgtccattttagcctgtgtgatattagatgtatgcactgttca 476
|| ||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 613 acagagaagataagtcctgttcattttagcatgtgtgatattagatgtatgtactgttca 672
Query: 477 cagcctga 484
|| |||||
Sbjct: 673 caacctga 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 881
Length adjustment: 10
Effective length of query: 475
Effective length of database: 871
Effective search space: 413725
Effective search space used: 413725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_b21.g1 MSMg01no345_b21.g1 CHROMAT_FILE:
MSMg01no345_b21.g1 PHD_FILE: MSMg01no345_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:30 2005
(442 letters)
>mm_chrY_2432592_2433438
Length = 847
Score = 311 bits (161), Expect = 4e-89
Identities = 336/401 (83%), Gaps = 21/401 (5%)
Strand = Plus / Plus
Query: 55 gttcaaaaagaccaaaaatgcaatgcaagtt-cagcaacttgatcccctatccatgcatc 113
|||||| |||| |||||| ||||||| ||| ||| | |||||||||| |||| ||||||
Sbjct: 255 gttcaagaagaagaaaaattcaatgca-gtttcaggatcttgatcccc-atccctgcatc 312
Query: 114 ttaaacccataggggct--agccagaatgcaaggtcagaagtctaaacttcacctatact 171
|||| ||||||||| | || ||||| | |||||||||||||||||||||||||||||
Sbjct: 313 ttaatcccataggg--tggagtcagaaggttaggtcagaagtctaaacttcacctatact 370
Query: 172 acaactaactctgaagatatctagcaatctccagttcctttctaatacttacccacacca 231
||||| |||| ||||||| |||||| |||||| ||| || ||| |||||| |||||||
Sbjct: 371 acaaccaactgtgaagatttctagccatctcctgtttctgtctggtacttagtcacacca 430
Query: 232 agtctgcattaagaaata-tg---gtctagtgtgagatagtgccagcagttaattgcaaa 287
||||||| ||||| ||| || ||||||||||||||||||||||||| | ||||||||
Sbjct: 431 agtctgccttaaggcatactgcaagtctagtgtgagatagtgccagcagatgattgcaaa 490
Query: 288 atcccactatgagttaagttgtatgtaaaatgagacatctgtaatatagacacacatg-- 345
| ||||||||| ||| | ||||| |||||||||||||||| ||||||||||||||| |
Sbjct: 491 aacccactatgtgttgacttgtacgtaaaatgagacatctataatatagacacacacgta 550
Query: 346 catattcacaaatactcacagaaagaggcaagaagtagaggagctaaatcttagaaatcc 405
|||| |||| ||||||||||||||||| ||||||| ||| |||| | |||||| || ||
Sbjct: 551 cata--cacacatactcacagaaagaggtaagaagtggagaagctgagtcttaggaaccc 608
Query: 406 tcaaggaagagaatga----aaatattgtaaggcacagagg 442
|||||||||||| || |||| ||||||||||||||||
Sbjct: 609 tcaaggaagaga--gagtagaaatcttgtaaggcacagagg 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 847
Length adjustment: 10
Effective length of query: 432
Effective length of database: 837
Effective search space: 361584
Effective search space used: 361584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
