BAC Information

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BAC

Clone NameMSMg01-347I03
ChromosomeY (Build37)
Map Location 2,785,706 - 2,785,860
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347I03.T7 (MSMg01no347_i03.b1)MSMg01-347I03.TJ (MSMg01no347_i03.g1)
ACCAG459832AG459833
length813753
length of high quality
(start - end)
155 (76 - 230)411 (78 - 488)
definitionCHROMAT_FILE: MSMg01no347_i03.b1 PHD_FILE: MSMg01no347_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:30 2005CHROMAT_FILE: MSMg01no347_i03.g1 PHD_FILE: MSMg01no347_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAAATTAGTCCTCATGTCAGNTXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTCCTTTTACTTTCTCTTGTTTCTCCAATTACTTCAGCAAGAT
TCTGCATTGCCTTTTGTTTTGGAAGATTCTCGAGGAATCCTAAATCCAGA
CTTTAGGGCAGTTATTTAAAATTCTTACTGGTGGTTCTGACAATGGCTTC
CTCTTTTTTTTTTCAATTAGGTATTTTTTCATTTACATTTCCAATACTAT
CCCATAAGTTTCCCCATACCCATCTCATCCCCACCACCACCACCACCCCT
ATATCCTGTCTCTGGCATACTTTTGTTTTAAGGTATATAAAGTTTGCAAG
ATTGATGCTTCTCTCTTTCTTTTGACGCCCAACCAGTCCGTCATTTGATA
TTTATGTTGCCTGATTTATGATCTCTGTCAAGTTGCTTCAATAATGAGTC
TCTCGACTGACTCCCTATATTCCTTTTGTTGTTCCCCCTTTGCTTTTTGC
TTACCCTCTTACCCTTTCTCGTTTACTTTTCTCTTACTTTCCCTTACTTC
TGTTTCTTGTTGATATCCCTCTCATTTTTTGTACTGTCCTCTTATCTTTC
CTTTTATTCTCTCTTTATCCTTTTTATTCTATTTTTCCATTTCCTACTCT
TTTATCCCTCTATTTATATTTTTCAACATTATTTCCCTCCTTTTCCTTCT
TTTATCCCTTCTCCTTTTTACCTTTTTCCACTTCCCCTCCTTCCCCATCT
TTCTTATTATTTCCCCCTCCCCCTTCCCTACCTTCTCCTATCCCTCTTAT
TTTTTTCTCTTTN
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAATCTTTAATTCCTCTTT
CCTTTTTAAATTTCCTTATAATTGCCCTGATGGTTGAGAGCTAATGGCTT
CTGGAAGCTTAAAACTTTCTGGCTTATTTTGTGGTTAAATTTGCCCACTT
TTGATGATTAATACCTGTGGTTTAATAGTGGAGTATTGATTTAGAACACA
ATCCCTTCCCTGCTCAGTGCTAAAAGTTCTTTAACCTTGTGTAGCCAGAG
AAATTCACATTCACAAGAAAAAGTACTCGCTTCAAAAGAAGGCTTTAGAC
TTTATTTCTAGGAGAGAGAAAAAAGGGGTACCTATTTTCTATTGTATTCA
ATTCTCACACTTTCTCAGAATACATGATCATATGGTATTCCAGGCTTCTA
TTTTATAAAAGGTACTATCAAGTTCACAACAATACTACAAGTCAATAAAT
CTAATAAGGAATGTCAGGAAGAATGTTTACTTGCAAGTCCATTGTGATTG
GTTATTAATTGTATATTCATTAGCTTGCTAGTAACTCCCCTAGCTCCTAT
AAGCTTTAACAAAATCTTTATGTCCAGGTTGTCAATCCAATGCCTAGTGT
TCTTATTCTTTTTTGAAGTTTTTATACCGATAACTCTTAGTCCCATATTC
TCATCTTTTCGCCCTTTGAACGTCTCTATAAATTGGTTTCCCTTCTCACC
CTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_i03.b1 MSMg01no347_i03.b1 CHROMAT_FILE:
MSMg01no347_i03.b1 PHD_FILE: MSMg01no347_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:30 2005
         (155 letters)



>mm_chrY_2785506_2786060
          Length = 555

 Score =  238 bits (123), Expect = 1e-67
 Identities = 147/155 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttctccaattacttcagcaagattctgcattgccttttgttttggaagattctcgagg 60
           ||||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 355 gtttctccaattacagcaccaagattctgcatttccttttgttttggaagattctcgagg 296

                                                                       
Query: 61  aatcctaaatccagactttagggcagttatttaaaattcttactggtggttctgacaatg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 295 aatcctaaatccagactttagggcagttatttaaaattcttgctggtggttctgacaatg 236

                                              
Query: 121 gcttcctcttttttttttcaattaggtattttttc 155
           | |||||| ||||||||| ||||||||||||||||
Sbjct: 235 gtttcctcatttttttttaaattaggtattttttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)