BAC Information

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BAC

Clone NameMSMg01-350L10
ChromosomeY (Build37)
Map Location 1,604,837 - 1,605,316
singlet/doubletsinglet
Overlap geneLOC100039381
Upstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373
Downstream geneLOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350L10.T7 (MSMg01no350_l10.b1)MSMg01-350L10.TJ (MSMg01no350_l10.g1)
ACCAG462260AG462261
length860759
length of high quality
(start - end)		38 (102 - 139)492 (82 - 573)
definitionCHROMAT_FILE: MSMg01no350_l10.b1 PHD_FILE: MSMg01no350_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:44 2005CHROMAT_FILE: MSMg01no350_l10.g1 PHD_FILE: MSMg01no350_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGACGATC
CGCGGAATTCAAATCCTTCCCCACAAATCAATTCGAATTTTGGACGTTCC
GTAAACTTTTAAAACAATCCTCTCGTTTTAAAATTTCCTCGTCGTCTCTC
TCTCGTCTCGTCTCGTCGTCGTCTCTTTCTAACCNACNCCCCCCCCCCCC
TCAACCCCCCCCCCCCCCCCACTCCCCCCCCCCCCCCTCCCCCCCCCTCC
CCCCACTCCCCTCTCTTCCATCCCCCCCCCCTTCCCCCCCCCCCTTCCCT
CCCCCCTCTCTCCTCTTACCCCTCCCTTTCTTCCCTCCCACCCCCCCCCC
CTCCCCTCTCTACTTCTCCTCTTTTCCCCCCCCCTCCTCCCCCCCCTCCC
CCACCTCCCCCCCCCCCCCTCTCCCCCCCCCCCCCCCCCCCCCCTTACCC
CCCCCCCCCTCCCCCCCCCCCCCTCCCTCCCCCCCCCCCCATCCCCCCCC
CCCCTCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCC
CCCCCCTCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCTCTTCCCCC
CCCCCCCCTTCTCCTCCCTCCACCTCCTCCTTCCCCCCCCCTCCCCCCTT
TCCCTTCCTCCCCCCCCCCCTTCCCCCCTCCCCCCCCCTCTCCCCTCCCC
TCCCCCCTTCCCCCCCTCCCCCCTCCCTCCCCCCCCCCCATCCCCCCTCC
TCCCTCCCCCCCCCCCCCCCCCCCCTCCCCTTCTCCCCCCCCCCCCCCTC
CCCCCTCCCCCCCCTCACCCCNCTCCCCCCCCTCCCTCTCCCTATCCCTC
CCTCCCTCCC

NNNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACGAACAAAATCTCTT
CAATCTGTCTCACCAATCATACATTAGGTCCAATGCTTGGGTGCTTTCTG
TTTCAGGCTCACGATGATCAATGGTATATACTTTCTAGGTTGTATAACTG
CACTTCATTTCTCTACCAGGAACCTTTCCTCAGATTCTGTCCTCAGCAAG
AATCCCATCTAATACCATCAGACACTTCTATGCATCAGAGGGAACAATGT
CTAGCTGTGTGCCTTGCAGGTTGGGTAGAGCACTGGCAATATCCCTTCTC
CTCCAGTAAACCCTCTCAAGGCTCACAACGGTTGTCTTCCAGGATAAAAT
CTGATTGCCTAAGAGAAGGAGCAAATCATCTCTGATTGCTCTAATGTCTA
AATGACATTGCAGATTAAGAAAAACCCTAGAGCTTCCCCAAGATTCTCAG
TCCGGGAGCATTTGGACAATCCATTATTTTCATAGGGTCCAAAATTGTTT
GAATTCTACAGACCAATGAATTGTTCCATTAGAAGCCGACTTTCCCGCAG
GTAGCAACAGCTCCAACTGCTGTCTCCAAGGNATTTAAACAAAAACACCT
GTAAAAGGCAGTGAACTGTTCCCTGTTCCACCCAGGTGACTTTTGTTTTT
TGGGGTGAAGGGGAAATACTAGGCTTGGGAATTCTTTTTTTTTGAGGGGG
CTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_l10.g1 MSMg01no350_l10.g1 CHROMAT_FILE:
MSMg01no350_l10.g1 PHD_FILE: MSMg01no350_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:44 2005
         (492 letters)



>mm_chrY_1604820_1605712
          Length = 893

 Score =  273 bits (141), Expect = 2e-77
 Identities = 404/497 (81%), Gaps = 31/497 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacgaacaaaatctcttcaatctgtctcaccaatcatacattaggtccaatgcttggg 60
           ||||| |||||||||||||||| ||||||||  ||| || || || || ||||| ||| |
Sbjct: 497 aaaacaaacaaaatctcttcaagctgtctcaggaattatgcagtaagtacaatgtttgtg 438

                                                                       
Query: 61  tgctttct--gtttcaggctcacgatgatcaatggtatatactttctaggttgtataact 118
           |||  |||  | ||||||| || |||||| |||||| || |||| | || ||||||||||
Sbjct: 437 tgc--tcttagcttcaggcccatgatgataaatggtttacacttgccagcttgtataact 380

                                                                       
Query: 119 gcacttcatttctctaccaggaacctttcctcagattctgtcctca-gcaagaatcccat 177
           |||||||||||||||||| |||||| |||||||||| ||||| | | | ||| |||||||
Sbjct: 379 gcacttcatttctctacctggaacccttcctcagatcctgtctttaag-aaggatcccat 321

                                                                       
Query: 178 -ctaataccatcagacacttctatgcatc-agagggaacaatgtctagctgtgtgccttg 235
            | || |||||||||||||||||||| || |||| |||||| |||||||| |||||| ||
Sbjct: 320 gc-aacaccatcagacacttctatgc-tccagagagaacaaggtctagctttgtgccgtg 263

                                                                       
Query: 236 caggttgggtagagcactggcaatatcccttctcctccagtaaaccctctcaag-gctca 294
           ||| |||||||||  |||| |||| ||| ||| ||||||| ||||||||||||  |||||
Sbjct: 262 cagtttgggtagaatactgtcaatttcctttcccctccaggaaaccctctcaaatgctca 203

                                                                       
Query: 295 caacggttgtcttccaggataaaatct--gattgcct-aagagaaggagcaaatcatctc 351
           ||  | ||| |||||||||  ||   |  || | | | ||| ||||||||||| ||||||
Sbjct: 202 ca--gtttgacttccaggaccaa---taggagtac-tcaagggaaggagcaaagcatctc 149

                                                                       
Query: 352 tgattgctctaatgtctaaatgaca-ttgcagattaagaaaaaccctag-agcttcccca 409
           |  |||||| |||||||||||| || |||||||| |||||   |||||| | || |||||
Sbjct: 148 ttcttgctccaatgtctaaatg-caattgcagataaagaatgtccctagca-ctccccca 91

                                                                       
Query: 410 agattctcagtccgg--gagcatttggacaatccattattttcatagggtccaaa-attg 466
           |||| |||||||| |  ||  |||||| |||||||||| ||||  ||| |||||| || |
Sbjct: 90  agatcctcagtcctgttga--atttgggcaatccattactttcc-aggttccaaacat-g 35

                            
Query: 467 tttgaattctacagacc 483
           |||||||||||||||||
Sbjct: 34  tttgaattctacagacc 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space:   425606
Effective search space used:   425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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