BAC Information

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BAC

Clone NameMSMg01-360N14
ChromosomeY (Build37)
Map Location 1,792,403 - 1,792,809
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137
Downstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360N14.T7 (MSMg01no360_n14.b1)MSMg01-360N14.TJ (MSMg01no360_n14.g1)
ACCAG469923AG469924
length944778
length of high quality
(start - end)		---411 (71 - 481)
definitionCHROMAT_FILE: MSMg01no360_n14.b1 PHD_FILE: MSMg01no360_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:42 2005CHROMAT_FILE: MSMg01no360_n14.g1 PHD_FILE: MSMg01no360_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTCTGTCCTGTTTTTCTACTCACTATTTCCCCAGTACCCGTGGGATT
ACGAACTTTCCCCAATGAAAGCTAGGATGACTGTACTTATGCACGACATA
CGAGCAAGGGGAACAGCCCCCACTGCTAAGTATGCTCTCCCCCCACTGGA
GAAAATCAACCGAACCCCTCGGGTTAATTTCGAGAAAAGAACCGAAAGGA
GGGCTGAACGGGAACCATGTTGGTCTCAAATGGCTATGGCAACCTAAGAA
TTCCTCCCCCAATGGCTAATACTACCCTAAACAGGGCAGCCACAATATGG
AAACTAATCAGAACGGGTCTCCTTAACCCCTTTCTTCTGAAATTAAAATC
CTGCCTTTGATTCTTCTATTTCCCTTCAGAACATTGCAATGCACCCATAT
CTCTTCAACCAAAACTAAGAAGACCATCTATAGGTTGTTCACAGAGATTC
CGGTTAGGGAATGGCGGTACTTTTCCCCTTTGGTAGAACTGGGCAAATGG
GTCCACGTAATATTATCGTCTAAGGTTGCACACAAGTTATGCAATGGTTG
GTACTCTCGGAATTGCACCCTATTTACACATTATTATCTTAATCTAGTGG
CCTACTCTATCTTCTCTGGCCCTTCCTATTATCTCTTATTTTTTGGCCAT
ACCGGTCAACTCCCACCGAAATAACTTCCTATGTGACCTCCCATTTTTCA
CCCCATCTTTCCCCCTTTACTTACTCTTATTTCATTAACCTCGTACTTTG
GCCCTGGCCTCCGTTCTACCTTCGCATTTCTCACTAGAGTATATTTCCAC
CCTGGTATACAATATGAATTTATCTTTTATGGTTTTGGCACTTTATACTT
AACATGTGTATTCACGCCTCTTCACATAGTCTGTTTCCCCCATTTTATCA
TCTGCTATCTCATTCTACACCCCCTCCCGGTTTCAACAATTTCC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGTCCAGAATAATTGAGACAGCAGGTCCT
CCTAAAGGGATACTCTCCTCTTCAGCCTCCTTCAGTCTTTCTCCAATTCC
CCAATGGTTCAGCAGATTCTGTCCATTGGTTGGTTGCAGACATATGCATC
TGATTGTTTCAACTGCTCATTAGGTCTTCAGAAGTGCATTCATGCTAGTA
TTCACATTACAATTATGTGAATTCAGAATTCAGCAGAGTTCGTGGACTGC
AAGCAGGTCTTCTGAAAAAGCAATGCATGATATAATTACCTGAATTTTCT
GGCAGTGCTCTTCAATATTGTGTTCTACGTGATGCAATATTCCACTCTCT
TTCTCTATCTCTGTCTCTGTCTCTGTCCCTCTCTGTCTCTGTCTCTCTCT
GTCTCTTTGTCTCTGTCTCTCTGTCTCTCTGTATCTGTCTCTGTCTCTGT
CTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTTCTCTCTCTCTCTCTGGCTGTCTCTCTCAATATCTATTCCT
CTAACACTCCCTATGACTAAAGAATCTCTTATCTTCTCTTCCTCAAAGGG
GATGATAATTTTATGGGCCTCTTGCAAATTGGTATTTCTGAATTCTAATT
ATGTAATAGAAACTTTTTTATATTGTTGTTTACCCCTCCCACATTTGCTT
TTTTTTTATCTTGCGTGGAATTATTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_n14.g1 MSMg01no360_n14.g1 CHROMAT_FILE:
MSMg01no360_n14.g1 PHD_FILE: MSMg01no360_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:42 2005
         (411 letters)



>mm_chrY_1792108_1792918
          Length = 811

 Score =  590 bits (305), Expect = e-173
 Identities = 385/413 (93%), Gaps = 9/413 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtccagaataattgagacagcaggtcctcctaaagggatactctcctcttcagcctcc 60
           |||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 702 tggtcctgaataattaagacagcaggtcctcctaaagggataccctcctcttaagcctcc 643

                                                                       
Query: 61  ttcagtctttctccaattc-cccaatggttcagcagattctgtccattggttggttgcag 119
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttcagtctttctccaattcacccaatggttcagcagattctgtccattggttggttgcag 583

                                                                       
Query: 120 acatatgcatctgattgtttcaactgctcattaggtcttcagaagtgcattcatgctagt 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 582 acatatgcatctgattgtttcaactgctcattaggtctgcagaagtgcattcatgctagt 523

                                                                       
Query: 180 attcacattacaattatgtgaattcagaattca-gcaga-gttcgtggactgcaagcagg 237
           ||||||||||||||||||||||||||| |  || ||||| ||| | ||||||||||||||
Sbjct: 522 attcacattacaattatgtgaattcagga-gcacgcagaggtt-gcggactgcaagcagg 465

                                                                       
Query: 238 tcttctgaaaaagcaatgcatgatataattacctgaattttctggcagtgctcttcaata 297
           ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 464 tcttctgcaaaggcaatgcatgatataattacctgaattttctgtcagtgctcttcaata 405

                                                                       
Query: 298 ttgtgttctacgtgatgcaatattccactctctttctctatctctgtctctgtctctgtc 357
           |||| ||||||||||||||||||||| |||||||||||  ||||||||| | ||||||| 
Sbjct: 404 ttgtattctacgtgatgcaatattcctctctctttctc--tctctgtctgtctctctgt- 348

                                                                
Query: 358 cctctctgtctctgtctctctctgtctctttgtctctgtctctctgtctctct 410
            || ||| ||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 347 -ctgtctctctctgtctctctctgtctctctgtctctgtctctctctctctct 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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