BAC Information

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BAC

Clone NameMSMg01-362H17
ChromosomeY (Build37)
Map Location 1,311,419 - 1,311,882
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
Downstream geneLOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362H17.T7 (MSMg01no362_h17.b1)MSMg01-362H17.TJ (MSMg01no362_h17.g1)
ACCAG471157AG471158
length734741
length of high quality
(start - end)		526 (50 - 575)489 (83 - 571)
definitionCHROMAT_FILE: MSMg01no362_h17.b1 PHD_FILE: MSMg01no362_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:52 2005CHROMAT_FILE: MSMg01no362_h17.g1 PHD_FILE: MSMg01no362_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTAATGTAACCCTTATAACTTATTTTTAAATTTTATGTTA
TGGTTATTGTTTTTTTTTTTTTCTTTCACGTGTGTATGTGCACAACTAGT
GTGTCTTGTACCTGAGGAAGCCAGATGAAGGCCTTGAATCCCCTGAAACA
GAAGTTATAGGTAGTGAGCCACCTTGTGGGTTTTGGTACTCCAATCTCAG
AAAGCTGGAAGGGAACCAGTGCTCTTAACTGCTGAATCATCTCTCCAATC
CCTTCATTGTTTTTTTTTTTCTTTTTATGAAATGAATTATGTAACTGTAA
GTGGAAGACAACTTACTAAACAATGAGAGAATGATACTCAGATTCTAAAG
TATCTGTTTTAAATTATATGTAACTGAATGCTAAGTGAGCTTTCTCAGAA
GACAGTAACTTGTCTTTGAGATATGGTGTCATTATGTAGTTCAGGCTGGC
CTGCATTTTCCTATTTAACCTATGCAGTCTTTACACTGGAAATCTCCTGC
TTAAGCTTCCAATACTAGGATCATACACACACAAAAAAACATCTTTACAT
GGCTTACTAAACAATGCTCCTAATACCTATTTTTGGACTTATTTATGTGT
ATTAGTGTTTTGCTTACAGTTATATATGTGCACCACATGTGTACCTGTTG
TTCAGATATCAGTTGATTATTTCTAATACCTGGA

NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCAAAAAAATTGTATG
AAGTTCTCAAGGAATTAATTAATGTAGTTCTTAATATACAATGTCTGTAC
TGAACATATACAGACCACTTATATTTCAATCTCCTAAATAGCAACTCATT
TTATAGCACTTACATTAAATTAAGTGCAAAAGTAATCCAGAGATTATTTA
AAATAAAGAAGGATCAGGGGATATGGCCCAGAGACAATGCCAGGAGTGTG
TTCAAACATTCACCTACAACACCAGTGCTTAAGATTTTGGGAGGGGCAGA
GACAGGAAGATGATTGTGGCTTCCTGAAAGCCAGGCTCACTACCAGCTCA
GCAAGAAACCCAGTCACAAGGGGATAAGTTATGTAGGAAAAGAGTAGATC
ACACTATACCCTTCCCTAGCCTCTGAACTTACCTGTACAGTTCTCTATGC
AGACTCACATAAATATGATTAAAATATGCAAGAGGTTATTTTGCATAGCT
TATGTTCAAAAGCAGTGTTGTTTTAGACTAGAAACCTGAGGACTTTATAT
CATTATAGTTCCTGGAGCAAACTCCCAAGATATAAATGATGGGTATATCT
TCCTACTGTGCAAAGGAAACCTCAGTTAAGTGTGTGTGTCAGTGACTCAA
AACAGCTTTCCTCCTCTATGTTCCTTATATAGCATAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_h17.g1 MSMg01no362_h17.g1 CHROMAT_FILE:
MSMg01no362_h17.g1 PHD_FILE: MSMg01no362_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:52 2005
         (489 letters)



>mm_chrY_1310996_1311882
          Length = 887

 Score =  385 bits (199), Expect = e-111
 Identities = 404/479 (84%), Gaps = 26/479 (5%)
 Strand = Plus / Minus

                                                                       
Query: 22  ttctcaaggaattaattaatgtagttcttaatata-ca-atgtctgtactgaacatatac 79
           |||||||||||||||| || || |||||| ||||| || |  ||||||||||||||||||
Sbjct: 887 ttctcaaggaattaataaaagtggttctttatataccaca--tctgtactgaacatatac 830

                                                                       
Query: 80  agaccacttatatttcaatctcctaaatagcaactcattttatagcacttacattaaatt 139
           |||||||||||||| | |||||||||||| |||||| || ||||||| || ||||  |||
Sbjct: 829 agaccacttatattgccatctcctaaataacaactccttgtatagcagtttcattgcatt 770

                                                                       
Query: 140 aagtgcaaaagtaatccagagattatttaaaataaagaaggatcaggggatatggcccag 199
           ||| ||||||||||||||||||| ||||||||||||||| || | | ||| |||||||||
Sbjct: 769 aagggcaaaagtaatccagagatcatttaaaataaagaaagacctgtggagatggcccag 710

                                                                       
Query: 200 ag--acaatgccaggagtgtgt--tcaaacattcacctacaacaccagtgcttaagattt 255
            |  |    ||||  |||| ||  ||  |||||||||||||||| ||||||||| |||  
Sbjct: 709 gggta----gcca--agtgagtgatcccacattcacctacaacaacagtgcttaggatg- 657

                                                                       
Query: 256 tgggaggggcagagacaggaagatgattgtggcttcctgaaagccaggctcactacc-ag 314
            ||||||||||||||||||||||||| |||||||||||||||||||| | |||| || ||
Sbjct: 656 -gggaggggcagagacaggaagatgactgtggcttcctgaaagccagccccact-cctag 599

                                                                       
Query: 315 ctcagcaagaaacccagtcacaagggga-taagttatgtag-gaaaagagtagatcacac 372
           |||||||||| |||  |||||||||| | ||| ||| | || |||  ||| ||| |||||
Sbjct: 598 ctcagcaagagacctggtcacaaggg-agtaaattagggagtgaag-gagcagagcacac 541

                                                                       
Query: 373 tatacccttccctagcctctgaacttacctgtacagttctctatgcagactcacataaat 432
            ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||
Sbjct: 540 aatacccttccctagcctctgaacttacctgtacaggtctgtatgcatacacacataaat 481

                                                                      
Query: 433 atgattaaa--atatgcaagaggttattttgcatagcttatgttcaaaagcagtgttgt 489
           |||||||||  ||||  |||||||||| |||||||| |||| | |||||||| ||||||
Sbjct: 480 atgattaaagtatat--aagaggttatgttgcatagattatatgcaaaagcaatgttgt 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 887
Length adjustment: 10
Effective length of query: 479
Effective length of database: 877
Effective search space:   420083
Effective search space used:   420083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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