BAC Information

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BAC

Clone NameMSMg01-363F23
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363F23.T7 (MSMg01no363_f23.b1)MSMg01-363F23.TJ (MSMg01no363_f23.g1)
ACCAG471827AG471828
length756767
length of high quality
(start - end)		564 (30 - 593)372 (85 - 456)
definitionCHROMAT_FILE: MSMg01no363_f23.b1 PHD_FILE: MSMg01no363_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:03 2005CHROMAT_FILE: MSMg01no363_f23.g1 PHD_FILE: MSMg01no363_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTATACGACTCCTATATTTCGAGGATCCGCGGAATTCATCTCTA
ACTACCTTTGATTCCCATATCCTGAGATTAAAGTCCTTTCTAAGCAGATC
TCAACACCTTTTTTTAAAATTTTCTGTCTCACAGTTCTTGAAGAATAGAT
GGGGGAGCAGAGAAAATTTCACCCCAAAAAATTGGCAATTAGTGGCTGCA
GGTGTGAGGGCCAGTTTTCTTCATAGATTTGGCTCCTCAGAGGCTGCCCA
TGTTCCAGTGGATGTGTTTCCCTAACCCCACATATGTAGTCAGCACTAAA
TTCACTCAGTGGTCTTTATTAAAATGTGCATGGAATTAAAGCTAAAAGTG
ATACAGGAGAAATGGAGAGCAATTCAAGGAGGAGAAGATGGGGATGGATT
TACTCAAACTCATTATGTTTATGTACAAAGTTCTTCAGCAAAACATTTAA
AACTAAGTAAGTAAGTAAATAAGTAAATAAGTAAGTAATAAGCAAGCAAG
CAAGTAAGTAAAAAATAAATATATGAGTAAATAAACAAATATATTTTTAT
GCAATATCACGTGCAATANGCATGAAAGTGTGTGTGTGTGTGTGTGTGTG
TGTGTNTNTTNTTTTNNNNCCTTTTTNNTTTCCCTTTTTTCTTTCCTTTT
CCTTCCTCTTTTTTTTTTTTCCCTCCTTTCNTTTCTCTCCTTTCCCCTTT
TTTTTTCTCCCCTCCCTTTTTTTTTTTTCTCTTCTCTTTCCCTCCCCCTT
TTCTTC

TTTTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGAGATCATTGGT
CAGGTTGTGAATATCCTGTATGACTTGAGGGATGTGGCAAAGGGACTGTA
GTACTTTGGAATATTGGTGAGGTATCCTGAGATTCTACCATGTTGACTAG
TTCCCTCGCTTCTGTTGGAAAGATGCTGAATGTTCTAGAAACCCCGGGAA
TCGTCAGCAAAAAATCCAAAGTTTCCTGGACAGGTATAGAATATTCTGGA
ACTGCTTGTTTACATCTCACAGTTGTTGGAGTACCTGATGTAATTAGTGG
AAATTTCTGAGCACATGGTACAGAAGACAAAGGTTTCACAGTCACTTGGG
AAGATAACAATGTTTTTTTTTTTGTTGTTTGTTTGTTTTGTTTTGTTTTT
GTTTTTTGNTTGTTTNNNNTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTCCCTCCTTT
TTCCTTTTCTTTTCCTCTTTTCTTTTTCTCCTCTTTTTTTTTTTCCTCCT
CTTTTTTTTTCTCTCTTTTTCTTGTTTTTTTTCCTTTCCTTCTCTCCTTT
TTTTTTCCTTTTCTTCCCCTTTTTCCTTTCCTTTTCCTTCCTTTCTTTCT
TCTTTTTTTTCTTCTTTTTTTCTCCCTTTCCCCCCCCTTTCTTNATTCTT
NCCTATAATTTTCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_f23.b1 MSMg01no363_f23.b1 CHROMAT_FILE:
MSMg01no363_f23.b1 PHD_FILE: MSMg01no363_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:03 2005
         (564 letters)



>mm_chrY_2603451_2604415
          Length = 965

 Score =  130 bits (67), Expect = 3e-34
 Identities = 94/105 (89%), Gaps = 5/105 (4%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcatctctaactacctttgattcccatatcctgagattaaagtcctttctaagcag 68
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 252

                                                        
Query: 69  atctcaacaccttttt---ttaaaattttctgtctcacagttctt 110
           | |||||||  |||||   || ||||||||||||||||| |||||
Sbjct: 251 acctcaaca--tttttgtttttaaattttctgtctcacaattctt 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space:   529070
Effective search space used:   529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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