BAC Information

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BAC

Clone NameMSMg01-371C06
ChromosomeY (Build37)
Map Location 2,783,351 - 2,783,797
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371C06.T7 (MSMg01no371_c06.b1)MSMg01-371C06.TJ (MSMg01no371_c06.g1)
ACCAG477721AG477722
length768766
length of high quality
(start - end)		510 (72 - 581)574 (43 - 616)
definitionCHROMAT_FILE: MSMg01no371_c06.b1 PHD_FILE: MSMg01no371_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:26 2005CHROMAT_FILE: MSMg01no371_c06.g1 PHD_FILE: MSMg01no371_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTATATTTTGAATATTAGCCTTCGAT
CAGATGTAGGGTTAGTAAAGAACTTTTCTCCATTACTAGGTTGCTATTTT
GTCCTATTGACAGTGTCCTTTGCCTTACAGAACCTTTTCAGTTTCAGAAG
GTCCCATTTGTTAATTGACCAAGATATGCTTTCAGACATGAACATGGCAT
GACTGTCCTAAAAGAGGCTATGCCATCAACTGACTGAGACAGATGCAGAT
ATTTACAGCCAATCATTGGTCTAAACCCAGGAACCCCTATGGAAGAGTTT
GATCAAAAACTGAAGGAACTGAAGGGAATTACAACCCTATTGGAAGAACA
ACACCATGAAAAAACTAGATTTCCCAGAATTCTCAGGTACTAAGCCACCA
ACCAAAAAGCATACATGTACTAGTACATAACCCCTACTATACATATGTAG
CAGAGGATTGCATTGTCTGGCCTCAGTGCGATGAGGGTTTGTGCTTGTCC
TGTGGAAGCTTTATGTCCCCAGAAAAGTTGAATTCTAGAGAGGTGGGTGG
GAGAGTAACATTTTAGAGAATGGAGGGAATTGTTGTACTTCTCTTAATGC
TTTAATCTGTCTTATTGTTATTCCTTTTATCTACCCATTTCTTTTTTTTT
TTTCTACATTCCTTCTTTTAGTCCTCTTCTACTTTTTCTCCTTTCCTTTT
TTTTTCTTCTCTATTTAT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGTTTGCTTTTCTCTTGTTTCTCCAATTACAGCACCAAGATTCTTCA
TTTCCTTTTGTTTTGGAAGATTCTCAAGGAATCTTAAATCCAGAATTTAG
GACAGTTATTTAAAATTCACACCTGGGGATTAATCTTCAGAAAATTATTT
TTGGGAAAAACATGTGATTATTTCAACATCTATAGTAGTGTGGGGGCATT
ATTCTCCCTACGCCATGTACACTTAAGATCTTTAGATACCTCCTTCCCTG
TGATAGCCTTGCAGCTCACTGAGTGACATGTGCATTTGATGATAAATGAT
ACACAAACTTTGAAGCACCTTACCATATCCTGTCACCCATATCATGTTCA
ACATAGCAAGAACCACAAGTGAGTTGAAAAATACAAATACATTTTTTAGT
GTCTTGAAGCTAAAATCCCCAAATTAATCAAAATATTATTTGGACTCTGT
TACTTTATACCAGTGTTTTTTTTTTTAAGTGTACAAGTCGCAGGCCTTTT
CTGTGACCCTTTGCACAGGTTTACAGTGTCCTTTTACCATCTTCATCCTC
CCCACTATCCTCCATTGCTATCAGATCTCCCCCCTCCTGCTGCGCTTACT
CTTCCAAATACCTCCTATTTTTTAATGTCCTTATTAAATTATATTTTTAT
CATAGTCTTTTTGAGTTTTACTTGTCCTACCCANTAATAGTATTTTACCC
TTCCCTCCATTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_c06.g1 MSMg01no371_c06.g1 CHROMAT_FILE:
MSMg01no371_c06.g1 PHD_FILE: MSMg01no371_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:26 2005
         (574 letters)



>mm_chrY_2783029_2783997
          Length = 969

 Score =  714 bits (369), Expect = 0.0
 Identities = 430/453 (94%), Gaps = 7/453 (1%)
 Strand = Plus / Minus

                                                                       
Query: 123 attcacacctggggattaatcttcagaaaattatttttgggaaaaacatgtgattatttc 182
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 769 attcacacctggggattaatcttcagaaaattattttggggaaagacatgtgattatttc 710

                                                                       
Query: 183 aacatctatagtagtgtgggggcattattctccctacgccatgtacacttaagatcttta 242
           ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||
Sbjct: 709 aacatctatagtagtgtggggccattattctccctacatcatgtacacttaagatcttta 650

                                                                       
Query: 243 gatacctccttccctgtgatagccttgcagctcactgagtgacatgtgcatttgatgata 302
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 649 gatacctccttccctgtgatagccttgcagctcactgaatgacatgtgcatttgatgata 590

                                                                       
Query: 303 aatgatacacaaactttgaagcaccttaccatatcctgtcacccatatcatgttcaacat 362
           |||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 589 aatgatacacaaacattgaagcaccttaccatatgatgtcacccatatcatgttcaacat 530

                                                                       
Query: 363 agcaagaaccacaagtgagttgaaaaatacaaatacattttttagtgtcttgaagctaaa 422
           ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 529 agcaagaaccacacgtgagttgaaaaatacaaatacattttatagtggcttgaagctaaa 470

                                                                       
Query: 423 atccccaaattaatcaaaatattatttggactctgttactttataccagtgttttttttt 482
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   
Sbjct: 469 atccccaaattaatcaaaatattatttggactctgttactttatacaagtgtttttt--- 413

                                                                       
Query: 483 ttaagtgtacaagtcgca-ggccttttctgtgaccctttgcacaggtttacagtgtcctt 541
             |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 412 --aagtgtacaagtcg-atggccttttctgtgaccctttgcacaggtttatagtgtcctt 356

                                            
Query: 542 ttaccatcttcatcctccccactatcctccatt 574
           ||||||||||||| ||||||| |||||||||||
Sbjct: 355 ttaccatcttcatactccccaatatcctccatt 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 969
Length adjustment: 10
Effective length of query: 564
Effective length of database: 959
Effective search space:   540876
Effective search space used:   540876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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