BAC Information

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BAC

Clone NameMSMg01-372N03
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372N03.T7 (MSMg01no372_n03.b1)MSMg01-372N03.TJ (MSMg01no372_n03.g1)
ACCAG478995AG478996
length741794
length of high quality
(start - end)
548 (44 - 591)309 (74 - 382)
definitionCHROMAT_FILE: MSMg01no372_n03.b1 PHD_FILE: MSMg01no372_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:39 2005CHROMAT_FILE: MSMg01no372_n03.g1 PHD_FILE: MSMg01no372_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTCTATCCGGTTTTGATTCCCATATCCTGAGATTAAAGTCCTTTC
TAAGCAGATCTCAACACTTTTTTTTAAAATTTTCTGTCTCACAGTTCTTG
AAGAATAGATGGGGGAGCAGAGAAAATTTCACCCCAAAAAATTGGCAATT
AGTGGCTGCAGGAGTGAGGGCCAGTTTTCTTCATAGATTTGGCTCCTCAG
AGGCTGCCCATGTTCCAGTGGATGTGTTTCCCTAACCCCACATATGTAGT
CAGCACTAAATTCACTCAGTGGTCTTTATTAAAATGTGCATGGAATTAAA
GCTAAAAGTGATACAGGAGAAATGGAGAGCAATTCAAGGAGGAGAAGATG
GGGATGGATTTACTCAAACTCATTATGTTTATGTACAAAGTTCTTCAGCA
AAACATTTAAAACTAAGTAAGTAAGTAAATAAGTAAATAAGTAAGTAATA
AGCAAGCAAGCAAGTAAAAAATAAATATATGAGTAAATAAACAAATATAT
TTTTATGCAATATCACGTGCAATAGGCATGAAAGTGTGTGTGTGTGTGTG
TGCGTGTGTGTGCGTGTGCTTTTCCTCCCTTTTCCTCTTTTCTTCATCTC
ACCTTTTATTTTTTCCCACATTATTGATACCCGTCGCGCCCCACTTTCTC
TTTGTCCTCTGCTTTTTTCTCTTTCCCCTATCCTTTTTTCT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCGCAGGCAGCAGCAGCTAAAAGAAG
GTTTTAGTCTGTTGGCTCCACTAACTGACTTCCAATTTACTCACTCCTCA
CCTCCCCAAGCCCCAAGAAGACTTCCAGGGTCTCCAATTCCCTGGCCTTC
CTGCTTTCTGTTAGAAGATAATTCTGTTCAAACCCCTGCCCTTAGCGAAG
TTCTCTGTTTTTCTCAGCAGAGAACTAAGTGGGAAAAGTTGATTGTGAGC
CTGGAAGCAGTACCTTCCTGAGTCCAGTGAGGGTCACCTCCTCTCCTTAC
TCCTAAAGTAACACCTCCACCCCTCCACCTTCTTTCCCACACAGGCCCCC
AGCTCAAACAGTATTAATCATCTTTCAACAGACAATTGACTACCTCTACT
GAGACTTTCTCCCTACCATGCTTCCCCAAGAAACCTTGCTTCCCAAAAAA
ACTCGGGTTTGGTGACTACCCACAAAGTAAACGGGGTTAAAAGGGTTTGG
GAAACGGGTTAAAAAAATCCTCCACCAAGGGCCCTTGGTGAATGGGTAAG
GTTTTGCCAATGGGTTTACAAAGGGGGGAAAAAGGGGTTTACAAACGCGC
CTGTTTTTTGAAAAAAAAAAAGGGGTGTTATTTTTTTTTCGGGTCTAAAA
TTCACAAAAGGTTTCTTTATTTTTCCCGTTTTATAAAATTATTTTGTGAC
CCCAAAATCAAGTTGTGCTCCTAACACATTTCCTTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_n03.b1 MSMg01no372_n03.b1 CHROMAT_FILE:
MSMg01no372_n03.b1 PHD_FILE: MSMg01no372_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:39 2005
         (548 letters)



>mm_chrY_2603455_2604403
          Length = 949

 Score =  145 bits (75), Expect = 7e-39
 Identities = 96/103 (93%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctctatccggttttgattcccatatcctgagattaaagtcctttctaagcag 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 248

                                                      
Query: 65  atctcaacactttt-ttttaaaattttctgtctcacagttctt 106
           | ||||||| |||| |||| ||||||||||||||||| |||||
Sbjct: 247 acctcaacatttttgtttttaaattttctgtctcacaattctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space:   505182
Effective search space used:   505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)