BAC Information

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BAC

Clone NameMSMg01-373D19
ChromosomeY (Build37)
Map Location 2,603,659 - 2,603,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236
Downstream geneEG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373D19.T7 (MSMg01no373_d19.b1)MSMg01-373D19.TJ (MSMg01no373_d19.g1)
ACCAG479314AG479315
length693734
length of high quality
(start - end)		583 (9 - 591)430 (58 - 487)
definitionCHROMAT_FILE: MSMg01no373_d19.b1 PHD_FILE: MSMg01no373_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:09 2005CHROMAT_FILE: MSMg01no373_d19.g1 PHD_FILE: MSMg01no373_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATTCAGAGGATCCGCGGAATTCATCTCTATCTGGTTTTGATTCCCATA
TCCTGAGATTAAAGTCCTTTCTAAGCAGATCTCAACACCTTTTTTTAAAA
TTTTCTGTCTCACAGTTCTTGAAGAATAGATGGGGGAGCAGAGAAAATTT
CACCCCAAAAAATTGGCAATTAGTGGCTGCAGGTGTGAGGGCCAGTTTTC
TACATAGATTTGGCTCCTCAGAGGCTGCCCATGTTCCAGTGGATGTGTTT
CCCTAACCCCACATATGTAGTCAGCACTAAATTCACTCAGTGGTCTTTAT
TAAAATGTGCATGGAATTAAGGCTAAAAGTGATACAGGAGAAATGGAGAG
CAATTCAAGGAGGACAAGATGGTGATGGATTTACTCAAACTCATTATGTT
TATGTACAAAGTTCTTCAGCAAAACATTTAAAACTAAGTAAGTAAGTAAA
TAAGTAAATAAGTAAGCAATAAGCAAGCAAGCAAGTAAGTAAAAAATAAA
TATATGTGTAAATAGACAAATATATTTTTATGCAATCTCACGTGCAATAG
GCATGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNNNNNNN
NNTNNNNNNNNNNTNNNTTNTTTTNTTTNTTTTTTTTTTTTTTTTNTTTT
TTTTTTTTTTTTTTNTTNNTTTTTTTTTTTTTTTTNNTTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGATCTTTCTTTGATTTTTATCATGAATGGGTGTTGGATTTG
TTTAAATGATTTCTCAGCATATAACGAGATGATTATGTGGTTTTTGTTTT
TGAGTTTCTTATGTAGTGGATTACGTTGATGTGTTTCCTTATATTAAACC
ATCCCTAAATCCCTAGGATGAAGCCTACTTGATCATTATTGATGATTTTT
GTGATATGTTCTTGGATTCAGGTTGCATGGACTTTATTAAATATTTTTGC
ATCGATATTCATAAGGGAAATTGGTCTGAAGTCTTCTATTTTGTTGGGAA
TTTATGTGGTTTAGTTATCAACGTAATTTTGGCTTCTATAGAATTAATTG
AATAGAGTACCTTCAGTTTCTATTTTATGGAAGAGTTTCGGGACAGTTGG
AATTAGTTCTTTTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATGTG
GGCTGTCCTGGGCATTATTTGGCTGGGAGATTATCAGCGACTGCTTCTAT
TTTCCTAATGGGTATCGGCCCCTGTTTTTATTCTCCATCCCTCCTCCGGC
GCTCTCATTTCTCTATATATAACTCTCTTCTCTCCACCATCTGTCCTTTT
CTTTTTCCTTGCTTTCCCCTGTCCTTTTACCTCTTATCATCTCTCTCTTT
ACCCTACCTACCCTATTAAATCCATTTATATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_d19.b1 MSMg01no373_d19.b1 CHROMAT_FILE:
MSMg01no373_d19.b1 PHD_FILE: MSMg01no373_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:09 2005
         (583 letters)



>mm_chrY_2603449_2604432
          Length = 984

 Score =  145 bits (75), Expect = 8e-39
 Identities = 96/105 (91%), Gaps = 5/105 (4%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattcatctctatctggttttgattcccatatcctgagattaaagtcctttctaagcag 70
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaattcatctctaactggttttgattcccatatcctgagattaaagtcctttctaagcag 254

                                                        
Query: 71  atctcaacaccttttt---ttaaaattttctgtctcacagttctt 112
           | |||||||  |||||   || ||||||||||||||||| |||||
Sbjct: 253 acctcaaca--tttttgtttttaaattttctgtctcacaattctt 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space:   558102
Effective search space used:   558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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