BAC Information

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BAC

Clone NameMSMg01-381L05
ChromosomeY (Build37)
Map Location 932,808 - 933,314
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y
Downstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381L05.T7 (MSMg01no381_l05.b1)MSMg01-381L05.TJ (MSMg01no381_l05.g1)
ACCAG485779AG485780
length727758
length of high quality
(start - end)		511 (37 - 547)492 (72 - 563)
definitionCHROMAT_FILE: MSMg01no381_l05.b1 PHD_FILE: MSMg01no381_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:12 2005CHROMAT_FILE: MSMg01no381_l05.g1 PHD_FILE: MSMg01no381_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:12 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAA
AGATCCGTTGGTGACAACTGGTGACATCACAGGGGATGTGCTCAAAGCTC
TCCAGGATTCAATAGAATGTCCAGAGGAGGGACTCATGATATGAGGAACA
GCTTTTGTCTACCTTCTAATGCTCTCTCAGTATTGACCTCAAACTGAGTT
TCCTATTCTAGGAAACTCTTGGGACATAGCCATTGAGTACCTCCTCATTC
CAAAGTCATAGATTGCCCTAGGCACTGGACAAACCTTAGCTCCTCCAACA
GGAAACTGAGTCTTTAATTTCCAAACCTTTTCCAGAATGGTCTCATTTCT
TCCTCAATATCCCTCTATTCATCTACATAAACAAGTACAGTACTGACAAA
CAATGAAAGGCAGAAATGGTCATTAGACAAATGTTGGGGCCCCTGACAGG
CTGTTACTAAAAGAAGCCAATTTTCTTGATCTCTTTGAGGTTCTATAATG
CTTCAGTGTTCTCATTCTTTAAACACTATAGGTCTATTATAAATAGGAGT
TGACCTGTGGTAGGAACCAATCCCAGGAGGATAGCAAATCATGAACACAG
AACTGTTGGATCATTTTAACCCCAAGGTGTATCTTTCCTGACCCCACTTC
CCGGAAGTATCAAATTCCACGGGCCCACGTATTTGGCAAAATATGAAGGC
TTGAGTACTTGCTATTCCTGCTCTCTA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAG
TCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCA
GGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCCCAAAGGAACTCACACCATATGGACTCACTGATAAGTGGA
TATTAGCCCCAAACCTAAGATACCCCAGATATAAGATACATTTTCCTATA
TCCTGGAAACTCCTAAAAAAGAATAACGGAGGGGGGACACTAGGCCCCTC
CTTATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_l05.b1 MSMg01no381_l05.b1 CHROMAT_FILE:
MSMg01no381_l05.b1 PHD_FILE: MSMg01no381_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:12 2005
         (511 letters)



>mm_chrY_932604_933514
          Length = 911

 Score =  965 bits (499), Expect = 0.0
 Identities = 505/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaaagatccgttggtgacaactggtgacatcacaggggatgtgctcaaagctc 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaaagagcagttggtgacaactggtgacatcacaggggatgtgctcaaagctc 264

                                                                       
Query: 65  tccaggattcaatagaatgtccagaggagggactcatgatatgaggaacagcttttgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccaggattcaatagaatgtccagaggagggactcatgatatgaggaacagcttttgtct 324

                                                                       
Query: 125 accttctaatgctctctcagtattgacctcaaactgagtttcctattctaggaaactctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accttctaatgctctctcagtattgacctcaaactgagtttcctattctaggaaactctt 384

                                                                       
Query: 185 gggacatagccattgagtacctcctcattccaaagtcatagattgccctaggcactggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggacatagccattgagtacctcctcattccaaagtcatagattgccctaggcactggac 444

                                                                       
Query: 245 aaaccttagctcctccaacaggaaactgagtctttaatttccaaaccttttccagaatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaccttagctcctccaacaggaaactgagtctttaatttccaaaccttttccagaatgg 504

                                                                       
Query: 305 tctcatttcttcctcaatatccctctattcatctacataaacaagtacagtactgacaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctcatttcttcctcaatatccctctattcatctacataaacaagtacagtactgacaaa 564

                                                                       
Query: 365 caatgaaaggcagaaatggtcattagacaaatgttggggcccctgacaggctgttactaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caatgaaaggcagaaatggtcattagacaaatgttggggcccctgacaggctgttactaa 624

                                                                       
Query: 425 aagaagccaattttcttgatctctttgaggttctataatgcttcagtgttctcattcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagaagccaattttcttgatctctttgaggttctataatgcttcagtgttctcattcttt 684

                                      
Query: 485 aaacactataggtctattataaatagg 511
           |||||||||||||||||||||||||||
Sbjct: 685 aaacactataggtctattataaatagg 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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