BAC Information

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BAC

Clone NameMSMg01-388I17
ChromosomeY (Build37)
Map Location 2,795,080 - 2,795,530
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388I17.T7 (MSMg01no388_i17.b1)MSMg01-388I17.TJ (MSMg01no388_i17.g1)
ACCAG491015AG491016
length772760
length of high quality
(start - end)
456 (37 - 492)229 (78 - 306)
definitionCHROMAT_FILE: MSMg01no388_i17.b1 PHD_FILE: MSMg01no388_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:54 2005CHROMAT_FILE: MSMg01no388_i17.g1 PHD_FILE: MSMg01no388_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGG
ACAAACAGATCTATACAGAGCAACCCTGTCTCATAAAAAAAAAATTGTTG
GAATATAATTTAGGATAAAACAGTTGTCTATTTCGGACCTCTGTATGCAC
ACATATAATGAAATGTATACACATCCTTTTTTGCTGAAACTCTTTTTCTG
ATTTACACAATCTATTCAAATTATGGTGATTTTATTTCTTTTCTGGAAAT
AGAAAATATTAAGAAAGTGTCATATCTTTATTTATCTCCACTGTATAGTA
AAATTAAACATCTATTGAGAGAAATGATCCAACATACTTTAAAACACACT
GGGCAGGGAATGAAAGATGACTTAGACATTAAGAGCACTAGTTGCTCTTG
GACAGAACCAAGGTTGAGTTCCTAGGACCCACATAATGGCTCACAACAAT
TTTTAATTAAGATCCAGGGGATTTTGCCATCCTATTCTAGTTTCTAAGAG
CATGAGACATGCATGTCGTATAAACATCAGATCATACGACAAATGTGCAA
AAACACGTTAGGTAAATAAATAAAACAATTTAGAATTACACACGACAGTC
CCATCCACTAAAACAAAGTAGGAGAGACTTCTTTGGTGATATGTTTGGTT
TGGTTTGGTTGGCCTCTGGGGGGNGGGCTTTTGGTCTCTTCTGCCCTCCT
TCGGGTTCCCCCCCTCCCGCCCCTCCGCCCCCGTCCCTCCTCCCCCCGCC
TCCCCTCCTGCCTTCCTCCCCG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAATTGAGAAATGAGTATA
TCCTTGTATGTTCCTGTGACTTTGCTACTTTTTTCATTCACAGAAGTGTC
CACAGCCCAAATAAAAAATTGTGTCAACTATATTCAGGGTGGGTGTTCCT
ACATCAACTAATAATTAAGACAGTTCCTCACAAACGTATGTCAGTCTTTT
TGTTTGTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTT
TTTTGNNTTTTNNNTNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTTTTTCCCCCCCNCCCCNGGGGGGGGTTCTCCCTCTTG
TTTTCTTGTTTTCCCCCCCCCCTTCTTTTTTTCGCCGCCTTCTTCTTCCC
CCCCCCTCTTTTCTTCCCTCCCGTCCTTTCCCCTCTCCTTTCTCCCCCCT
GCCCCCTCCCCCCCCCTTCCCTCTTTCTCTCTGCCTTTCTCTTCCCTTTC
CCCTCTCCCCTGCTTCTCCCCCGTCCTCCTCTCTTTCCGTTCCCTCTCTC
CGTCTCCGTTTCTCCTTTCTTTTCTCTTTGCCTCTTCCTTCCCCCTTCCG
TTCCTTTTTTTTTTCTTTCCCTGTCCCTTCCTCTCCCCTTTTCCTCTTTT
TCTCCTTTTTCCCTTTCCCCCTCCGCTCCTTTTCCCTTTCCTTCCCCCCT
TTTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_i17.b1 MSMg01no388_i17.b1 CHROMAT_FILE:
MSMg01no388_i17.b1 PHD_FILE: MSMg01no388_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:54 2005
         (456 letters)



>mm_chrY_2794966_2795820
          Length = 855

 Score =  677 bits (350), Expect = 0.0
 Identities = 429/458 (93%), Gaps = 16/458 (3%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttccaggacaaacagatctatacagagcaaccctgtctcataaaaaaaaa-attgttgga 66
           ||||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||||
Sbjct: 565 ttccaggacaaacagatctatacagagaaaccctgtctcataaaaaaaaatat--ttgga 508

                                                                       
Query: 67  atataatttaggataaaacagttgtctatttcggacct-ctgtatgcacacatataatga 125
           |||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 507 atataatttaggataaaacagttgtctatttctgacctcct-tatgcacacatatactga 449

                                                                       
Query: 126 aatgtatacacatccttttttgctgaaactcttttt-ctgatttacacaatctattcaaa 184
           |||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 448 aatgtatatacatcgttttttgctgaaactctttttac-gatttacacaatctattcaaa 390

                                                                       
Query: 185 ttatggtgatt-ttatttcttttctggaaatagaaaatattaagaaagtgtcatatcttt 243
           |||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 389 ttatggtg-ttcttatttcttttctggaaatagaaaatattaagaaagtgttatattttt 331

                                                                       
Query: 244 atttatctccactgtatagtaaaattaaacatctattgagagaaatgatccaacatactt 303
           ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 330 att-atctccactgtatagtaaaattaaacatctatcgagagaaatgatccaacatactt 272

                                                                       
Query: 304 taaaacacact----gggcagggaatgaaagatgacttagacattaagagcactagttgc 359
           ||||||||||     |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 271 taaaacacacacacagggcagggaatgaaagatgacttagatattaagagcact-gttgc 213

                                                                       
Query: 360 tcttggacagaaccaaggttgagttcctaggacccacataatggctcacaacaattttta 419
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 212 tcttggacagaaccaaggtttagttcctaggacccacataaaggctcacaacaattttta 153

                                                 
Query: 420 att-aagatccaggggattttgccatcctattctagtt 456
           ||| ||||||||||| ||||||||||||||||||||||
Sbjct: 152 attcaagatccagggcattttgccatcctattctagtt 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 855
Length adjustment: 10
Effective length of query: 446
Effective length of database: 845
Effective search space:   376870
Effective search space used:   376870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)