Query= MSMg01no389_i13.b1 MSMg01no389_i13.b1 CHROMAT_FILE:
MSMg01no389_i13.b1 PHD_FILE: MSMg01no389_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:10 2005
(341 letters)
>mm_chrY_1715914_1716658
Length = 745
Score = 190 bits (98), Expect = 1e-52
Identities = 277/346 (80%), Gaps = 36/346 (10%)
Strand = Plus / Minus
Query: 3 acaatgggaacagagagtaggggctg-gtcctgggaaagaga-aaggggccaatcag-tc 59
||||| ||||||||||| ||| |||| | ||||| ||| ||| | ||||| |||||| ||
Sbjct: 517 acaataggaacagagagaaggagctgag-cctggaaaacagagagggggctaatcagttc 459
Query: 60 attttatccttcctctcaggtagcagttta------ttttgggt-caagaaacaaatata 112
||||||||| |||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 458 -ttttatcctgcctctcagatagcagtttagttttttttt---tccaagaaacaaatata 403
Query: 113 ctttctttcaatgaattttataagtgaacaggaaatatttccatctctcagaac-tgcct 171
||||||||||||||||||| | |||||||||||||||||| ||||| ||||| | | |
Sbjct: 402 ctttctttcaatgaattttgttagtgaacaggaaatattttcatctatcaga-cataaca 344
Query: 172 gtgga-aattttat--tgtggttataggagtttttttgggtctattttccgaagaaaaat 228
||| | |||||||| ||| |||||| || ||||||||| ||||||| ||||| |||
Sbjct: 343 gtg-acaattttatattgt--ttatagaagattttttgggactattttattaagaacaat 287
Query: 229 taaagccaggtatgtt-t-aaactatacctgtattagcaccaacacggaatgctgaaccg 286
||||||||||||||| | ||| ||| | ||| ||| ||| ||| |||||||||||||
Sbjct: 286 gaaagccaggtatgttgtcaaa-tat--cggtaatagaacctacatggaatgctgaacct 230
Query: 287 caacactctatcac-ttcctagagaatacataacat---actaagt 328
||||| |||| || ||||| ||||||| ||||| |||||||
Sbjct: 229 caacattctag-acgttcctggagaata---aacatcacactaagt 188
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 745
Length adjustment: 9
Effective length of query: 332
Effective length of database: 736
Effective search space: 244352
Effective search space used: 244352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_i13.g1 MSMg01no389_i13.g1 CHROMAT_FILE:
MSMg01no389_i13.g1 PHD_FILE: MSMg01no389_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:10 2005
(320 letters)
>mm_chrY_1311075_1311795
Length = 721
Score = 310 bits (160), Expect = 1e-88
Identities = 284/336 (84%), Gaps = 29/336 (8%)
Strand = Plus / Minus
Query: 6 gggaggggcagagataggaagatgactgtggcttcctgaaagcc------------agct 53
|||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 577 gggaggggcagagacaggaagatgactgtggcttcctgaaagccagccccactcctagct 518
Query: 54 cagcaagaaacccagtcacaagggga-taagttatgtagga---aaagagtagatcacac 109
|||||||| ||| ||||||| |||| ||| ||| | ||| || ||| ||| |||||
Sbjct: 517 cagcaagagacctggtcacaa-gggagtaaatta-g--ggagtgaaggagcagagcacac 462
Query: 110 tatacccttccctagcctctgaacttacctgtacagttctctatgcagactcacataaat 169
||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||
Sbjct: 461 aatacccttccctagcctctgaacttacctgtacaggtctgtatgcatacacacataaat 402
Query: 170 atgattaaa--atatgcaagaggttattttgcatagcttatattcaaaagcaatgttgtt 227
||||||||| |||| |||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 401 atgattaaagtatat--aagaggttatgttgcatagattatatgcaaaagcaatgttgtc 344
Query: 228 ttagactagaaacctgaggacttt-atatcattat-agttcctggagcaaactcccaaga 285
|||| |||| ||||||||||||| ||||||||| ||| |||||||||||||||| |||
Sbjct: 343 ttagcctagggacctgaggacttttatatcattaggagt-cctggagcaaactccccaga 285
Query: 286 tatagatga-tgggtatatcttcttactgtgcaaag 320
|||||| || |||||||| |||||||||||||||||
Sbjct: 284 tataga-gaatgggtataccttcttactgtgcaaag 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space: 221432
Effective search space used: 221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
