BAC Information

Click to search

BAC

Clone NameMSMg01-395P10
ChromosomeY (Build37)
Map Location 1,655,855 - 1,656,292
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143
Downstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395P10.T7 (MSMg01no395_p10.b1)MSMg01-395P10.TJ (MSMg01no395_p10.g1)
ACCAG496654AG496655
length1,048766
length of high quality
(start - end)		---444 (79 - 522)
definitionCHROMAT_FILE: MSMg01no395_p10.b1 PHD_FILE: MSMg01no395_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:58 2005CHROMAT_FILE: MSMg01no395_p10.g1 PHD_FILE: MSMg01no395_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCACCAAACCGCCTCTCACACTACCTGAGATTATCCTTTTATTGCCCTC
TCCCCTTTTTCCTTATATCTCCTTCTTCCTCTGGCCCCCGCCTGCTTATT
GATCCCTCTGAGTCCCATTCGACGCATATATCTGATTATCTCTCATGGTG
GTGCGGTTGGGTTGTTCTTTTTTCATGTTTTTATCCTCTGTGTGGGTGTA
TTGTCGCAACAACTATTACTTTAAAACGCCGCACTCTACACCGCTTGTTG
CGGTTATGCGGGCGTTGGCGCCTGCGCCGCGGGGATTTTTATTCCGGAGG
AGTGATATCCGCACCCACGGTTATTTGACACATAACCTGTGGAGCACACC
ATTTTTTACCACCAGTATACTAATCTTGAATTCTACAACAAATGTTTAGA
ACCATTTGAAGAATCTAACCCTTCTCCCACAGCCTATTTATTGTAGAAAT
AGACGTTATGTTTAGCCAACAATAAGTAGTATAGATACATACACTGCGTT
TTGATCTAATCGAGTATCTTTATTGGCTGATTTTTGTCCGCCGCCACATG
TGATAAAGATACCGCTTTTTAGTTTGCTAGGCATAGAACCCGCCCCTGCG
GTGGTTGTTGGGCAGTTATGAGAGTACACACACTTTTTATCCGCTATGTT
TAATTCCCCTGTCTCTCACAAAGAACACTAGGTGTTGATAACCACCCCTC
TTTCCGCGCCTCATATTTTTCCACTATTTATCAACTTGCTTTTGTCTGCT
CATTAATATCTGTCACACGCCCCATCACCCGCTGTTTTTACATTGGCATG
GGGACGCGCGCGTTTGGCCATATATATATCCCATCTCTATATAGTCTTTC
TCACCCCGCGCATTAACACTTTTATTTCATTAAACACTCACTCTCTCTCC
TCCCTATTTCATTTCCGCCGAGCCTGCGTCTGTGTCTATCTGTGTGTCGC
GGCGGTACCATACCATACTATGACCTGGCGACTTATTGATGTCGCCGCCC
GTCATAAGATAACAAAACGTTTCTCTTGTCTTCTCTTACATCGCGATC

NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACAATTTTGGACCCTATGAAAG
TAATGGATTGTCCAAATGCTCCCGGACTGAGAATCTTAGGGAAGCTCTAG
GTTTTTTCTTAATCTGCAATGTCATTTAGACATTAGAGCAAGCAGAGATG
ATTTGCTCCTTCTCTTAGGCAATCAGAATCTGGAAGACAACCGTTGTGAG
CCTTGAGAGGGTTTGCTGGAGGAGAAGGGATATTGACAGTGCTCTACCCA
ACCTGCAAGGCACACAGCTATATCTTGTTCCCTCTGATGCATAGAAGTGT
CTGATGGTATTAGATGGGATTCTTGATGAGGACAGAATCTGAGGAAAGGT
TCCTTTAGAGAAATGAAGTGCAGTTATACAACCTAGAAAGTATATACCAT
TGATCATTGTGAGCCTGAAACAGAAAGCACCCACGCATTGGACCTAATGT
ATGATTGGTGAGACAGATTGAAGAGATTTTGTTTGTTTTGAATTCTCTGT
ATAGGTATGGATACATTGTCTCATGGGGAAGGGGGATGTGGAATTCCTGT
GGGTACTAAAAAAGAAAAAATTGTTAACAGGCCATGGAAAGGGGGCAGTC
CTACTGTATGCTGGGGCTGACCTTGCCTGGTTCAAAAAGGCTGAGCCCTC
CTTCTGTACTTTTTGAATTTTTATGCAAACACCCTCATAAACATTTTTGG
GGCCGGTGTGTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_p10.g1 MSMg01no395_p10.g1 CHROMAT_FILE:
MSMg01no395_p10.g1 PHD_FILE: MSMg01no395_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:58 2005
         (444 letters)



>mm_chrY_1655655_1656499
          Length = 845

 Score =  344 bits (178), Expect = 6e-99
 Identities = 379/452 (83%), Gaps = 29/452 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaattttggaccctatgaaagtaatggattgtccaaatgctcccggactgagaatctta 60
           |||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| 
Sbjct: 638 acaagtttggaccctatgaaagtaatagattgcccaaatgctcctggactgagaatcttg 579

                                                                       
Query: 61  gggaagct-ctaggttttttcttaatctgcaatgtcatttagacattagagcaagcagag 119
           ||||| || |||||  |||||||||||||||||| |||||||| ||| |||||||  |||
Sbjct: 578 gggaa-ctgctagggattttcttaatctgcaatggcatttagatattggagcaagtggag 520

                                                                       
Query: 120 atgatttgctccttctcttaggcaatcaga---atc-tggaagacaaccgttgtgagc-c 174
           ||| |||||||||||| ||||||| |||||    || |||||||||| | ||||||||  
Sbjct: 519 atgctttgctccttcttttaggcactcagatttgtcttggaagacaaactttgtgagcat 460

                                                                       
Query: 175 ttgagagggtttgctggaggagaagggatattgacagtgctctacccaacctgcaaggca 234
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct: 459 ttgagagggtttgctggaggagaagggatattgacagtgctctaaccaaactgcatggca 400

                                                                       
Query: 235 cacagctatatctt-gttccctctgat-gcatagaagtgtctgatggtattag-atggga 291
           |||||||| | ||| |||||||||| | |||||||| | ||||||||| || | |||  |
Sbjct: 399 cacagctaga-ctttgttccctctg-tagcatagaattttctgatggtgtt-gcatg--a 345

                                                                       
Query: 292 ttcttgatgaggacagaatctgaggaaaggttcctttag--agaaa--tgaagtgcagtt 347
           | |||| ||||||||| |||||||| ||| ||||   ||  |||||  || |||||||||
Sbjct: 344 tccttgctgaggacaggatctgaggcaagtttcc---aggtagaaaactgtagtgcagtt 288

                                                                       
Query: 348 atacaacctag-aaagtatataccattgatcattgtgagcctgaaacagaaagcacccac 406
           ||||||  ||| ||| |||| |||||| |||   ||||||||||| | || |||||  | 
Sbjct: 287 atacaaggtagcaaa-tataaaccattaatc---gtgagcctgaagctgagagcactga- 233

                                           
Query: 407 g-cattggacctaatgtatgattggtgagaca 437
           | |||||||||||||| || |||| |||||||
Sbjct: 232 gacattggacctaatgcataattgctgagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space:   362390
Effective search space used:   362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |